PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
3N7U
Asym. Unit
Info
Asym.Unit (760 KB)
Biol.Unit 1 (137 KB)
Biol.Unit 2 (137 KB)
Biol.Unit 3 (135 KB)
Biol.Unit 4 (135 KB)
Biol.Unit 5 (133 KB)
Biol.Unit 6 (135 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
NAD-DEPENDENT FORMATE DEHYDROGENASE FROM HIGHER-PLANT ARABIDOPSIS THALIANA IN COMPLEX WITH NAD AND AZIDE
Authors
:
I. G. Shabalin, K. M. Polyakov, A. E. Serov, O. E. Skirgello, E. G. Sadykh P. V. Dorovatovskiy, V. I. Tishkov, V. O. Popov
Date
:
27 May 10 (Deposition) - 09 Jun 10 (Release) - 09 Jun 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Biol. Unit 5: I,J (1x)
Biol. Unit 6: K,L (1x)
Keywords
:
Homodimer, Holo-Form, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
I. G. Shabalin, K. M. Polyakov, O. E. Skirgello, V. I. Tishkov, V. O. Popov
Structures Of The Apo And Holo Forms Of Nad-Dependent Formate Dehydrogenase From The Higher-Plant Arabidopsis Thaliana
To Be Published
[
close entry info
]
Hetero Components
(4, 52)
Info
All Hetero Components
1a: AZIDE ION (AZIa)
1b: AZIDE ION (AZIb)
1c: AZIDE ION (AZIc)
1d: AZIDE ION (AZId)
1e: AZIDE ION (AZIe)
1f: AZIDE ION (AZIf)
1g: AZIDE ION (AZIg)
1h: AZIDE ION (AZIh)
1i: AZIDE ION (AZIi)
1j: AZIDE ION (AZIj)
1k: AZIDE ION (AZIk)
1l: AZIDE ION (AZIl)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
2i: GLYCEROL (GOLi)
2j: GLYCEROL (GOLj)
2k: GLYCEROL (GOLk)
2l: GLYCEROL (GOLl)
2m: GLYCEROL (GOLm)
2n: GLYCEROL (GOLn)
2o: GLYCEROL (GOLo)
2p: GLYCEROL (GOLp)
2q: GLYCEROL (GOLq)
2r: GLYCEROL (GOLr)
2s: GLYCEROL (GOLs)
3a: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADa)
3b: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADb)
3c: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADc)
3d: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADd)
3e: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADe)
3f: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADf)
3g: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADg)
3h: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADh)
3i: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADi)
3j: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADj)
3k: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADk)
3l: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADl)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
4g: SULFATE ION (SO4g)
4h: SULFATE ION (SO4h)
4i: SULFATE ION (SO4i)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
AZI
12
Ligand/Ion
AZIDE ION
2
GOL
19
Ligand/Ion
GLYCEROL
3
NAD
12
Ligand/Ion
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
4
SO4
9
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(52, 52)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
51: FC6 (SOFTWARE)
52: FC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ILE A:122 , ASN A:146 , VAL A:147 , VAL A:150 , GLY A:200 , ARG A:201 , ILE A:202 , ASP A:221 , ARG A:222 , MET A:255 , PRO A:256 , ASN A:282 , ALA A:283 , ARG A:284 , ASP A:308 , HIS A:332 , SER A:334 , GLY A:335 , GLN A:376 , TYR A:377 , HOH A:383 , AZI A:403 , HOH A:585 , HOH A:586 , HOH A:588 , HOH A:589 , HOH A:590 , HOH A:591 , HOH A:592 , HOH A:593 , HOH A:595 , HOH A:596
BINDING SITE FOR RESIDUE NAD A 401
02
AC2
SOFTWARE
PRO A:97 , PHE A:98 , ILE A:122 , ASN A:146 , ARG A:284 , HIS A:332 , NAD A:401
BINDING SITE FOR RESIDUE AZI A 403
03
AC3
SOFTWARE
ARG A:354 , PRO A:362
BINDING SITE FOR RESIDUE SO4 A 1
04
AC4
SOFTWARE
HOH B:14 , ILE B:122 , ASN B:146 , VAL B:147 , VAL B:150 , GLY B:200 , ARG B:201 , ILE B:202 , ASP B:221 , ARG B:222 , MET B:255 , PRO B:256 , ASN B:282 , ALA B:283 , ARG B:284 , ASP B:308 , VAL B:309 , HIS B:332 , SER B:334 , GLY B:335 , GLN B:376 , TYR B:377 , AZI B:403 , HOH B:413 , HOH B:588 , HOH B:589 , HOH B:591 , HOH B:592 , HOH B:593 , HOH B:594 , HOH B:595 , HOH B:596 , HOH B:597 , HOH B:598
BINDING SITE FOR RESIDUE NAD B 401
05
AC5
SOFTWARE
PRO B:97 , PHE B:98 , ILE B:122 , ASN B:146 , ARG B:284 , HIS B:332 , NAD B:401
BINDING SITE FOR RESIDUE AZI B 403
06
AC6
SOFTWARE
HOH B:27 , ARG B:354 , PRO B:362
BINDING SITE FOR RESIDUE SO4 B 2
07
AC7
SOFTWARE
TYR B:184 , ARG B:185 , ASN B:326 , HOH B:611 , HOH B:687
BINDING SITE FOR RESIDUE GOL B 16
08
AC8
SOFTWARE
ILE C:122 , ASN C:146 , VAL C:147 , VAL C:150 , GLY C:200 , ARG C:201 , ILE C:202 , ASP C:221 , ARG C:222 , MET C:255 , PRO C:256 , ASN C:282 , ALA C:283 , ARG C:284 , ASP C:308 , VAL C:309 , HIS C:332 , SER C:334 , GLY C:335 , GLN C:376 , AZI C:403 , HOH C:430 , HOH C:548 , HOH C:549 , HOH C:551 , HOH C:552 , HOH C:553 , HOH C:554 , HOH C:555 , HOH C:557 , HOH C:558 , HOH C:559 , HOH C:667
BINDING SITE FOR RESIDUE NAD C 401
09
AC9
SOFTWARE
PRO C:97 , PHE C:98 , ILE C:122 , ASN C:146 , ARG C:284 , HIS C:332 , NAD C:401
BINDING SITE FOR RESIDUE AZI C 403
10
BC1
SOFTWARE
ARG C:354 , PRO C:362 , HOH C:665
BINDING SITE FOR RESIDUE SO4 C 3
11
BC2
SOFTWARE
ARG C:378 , HOH C:688 , ARG E:60 , ASP E:61
BINDING SITE FOR RESIDUE GOL C 10
12
BC3
SOFTWARE
TYR C:184 , ARG C:185 , ASN C:326
BINDING SITE FOR RESIDUE GOL C 17
13
BC4
SOFTWARE
HOH D:3 , HOH D:6 , ILE D:122 , ASN D:146 , VAL D:147 , VAL D:150 , GLY D:200 , ARG D:201 , ILE D:202 , ASP D:221 , ARG D:222 , MET D:255 , PRO D:256 , ASN D:282 , ALA D:283 , ARG D:284 , ASP D:308 , HIS D:332 , SER D:334 , GLY D:335 , GLN D:376 , AZI D:403 , HOH D:562 , HOH D:563 , HOH D:565 , HOH D:566 , HOH D:567 , HOH D:568 , HOH D:569 , HOH D:570 , HOH D:571 , HOH D:649
BINDING SITE FOR RESIDUE NAD D 401
14
BC5
SOFTWARE
PRO D:97 , PHE D:98 , ILE D:122 , ASN D:146 , ARG D:284 , HIS D:332 , NAD D:401
BINDING SITE FOR RESIDUE AZI D 403
15
BC6
SOFTWARE
ARG D:354 , PRO D:362 , HOH D:670
BINDING SITE FOR RESIDUE SO4 D 4
16
BC7
SOFTWARE
ARG D:378 , HOH J:11 , ASP J:61
BINDING SITE FOR RESIDUE GOL D 11
17
BC8
SOFTWARE
TYR D:184 , ARG D:185 , ASN D:326
BINDING SITE FOR RESIDUE GOL D 18
18
BC9
SOFTWARE
ASN D:170 , LYS D:174 , HOH D:506 , HOH D:579
BINDING SITE FOR RESIDUE GOL D 22
19
CC1
SOFTWARE
HIS D:126 , HOH D:391
BINDING SITE FOR RESIDUE GOL D 25
20
CC2
SOFTWARE
ASN E:146 , VAL E:147 , VAL E:150 , GLY E:200 , ARG E:201 , ILE E:202 , ASP E:221 , ARG E:222 , MET E:255 , PRO E:256 , ASN E:282 , ALA E:283 , ARG E:284 , ASP E:308 , VAL E:309 , HIS E:332 , SER E:334 , GLY E:335 , GLN E:376 , AZI E:403 , HOH E:565 , HOH E:566 , HOH E:568 , HOH E:569 , HOH E:570 , HOH E:571 , HOH E:572 , HOH E:574 , HOH E:575 , HOH E:654 , HOH H:509 , HOH H:510
BINDING SITE FOR RESIDUE NAD E 401
21
CC3
SOFTWARE
PRO E:97 , PHE E:98 , GLY E:121 , ILE E:122 , ASN E:146 , ARG E:284 , HIS E:332 , NAD E:401
BINDING SITE FOR RESIDUE AZI E 403
22
CC4
SOFTWARE
HOH E:22 , ASP E:125 , HIS E:126 , ASP E:128 , HOH E:513 , HOH E:514
BINDING SITE FOR RESIDUE GOL E 379
23
CC5
SOFTWARE
ASN F:146 , VAL F:147 , VAL F:150 , GLY F:200 , ARG F:201 , ILE F:202 , HIS F:220 , ASP F:221 , ARG F:222 , MET F:255 , PRO F:256 , ASN F:282 , ALA F:283 , ARG F:284 , ASP F:308 , VAL F:309 , HIS F:332 , SER F:334 , GLY F:335 , GLN F:376 , AZI F:403 , HOH F:405 , HOH F:410 , HOH F:534 , HOH F:535 , HOH F:537 , HOH F:538 , HOH F:539 , HOH F:540 , HOH F:541 , HOH F:542 , HOH F:543 , HOH F:544
BINDING SITE FOR RESIDUE NAD F 401
24
CC6
SOFTWARE
PRO F:97 , PHE F:98 , ILE F:122 , ASN F:146 , ARG F:284 , HIS F:332 , NAD F:401
BINDING SITE FOR RESIDUE AZI F 403
25
CC7
SOFTWARE
ARG F:354 , PRO F:362 , HOH F:402 , HOH F:631
BINDING SITE FOR RESIDUE SO4 F 20
26
CC8
SOFTWARE
TYR F:102 , VAL F:103 , HIS F:126 , ASP F:128 , HOH F:508 , HOH F:545 , HOH F:614
BINDING SITE FOR RESIDUE GOL F 26
27
CC9
SOFTWARE
HOH G:21 , PHE G:98 , ILE G:122 , ASN G:146 , VAL G:147 , VAL G:150 , GLY G:200 , ARG G:201 , ILE G:202 , ASP G:221 , ARG G:222 , MET G:255 , PRO G:256 , ASN G:282 , ALA G:283 , ARG G:284 , ASP G:308 , HIS G:332 , SER G:334 , GLY G:335 , GLN G:376 , HOH G:402 , AZI G:403 , HOH G:479 , HOH G:543 , HOH G:544 , HOH G:546 , HOH G:547 , HOH G:548 , HOH G:549 , HOH G:551 , HOH I:502 , HOH I:503
BINDING SITE FOR RESIDUE NAD G 401
28
DC1
SOFTWARE
PRO G:97 , PHE G:98 , ILE G:122 , ASN G:146 , ARG G:284 , HIS G:332 , NAD G:401
BINDING SITE FOR RESIDUE AZI G 403
29
DC2
SOFTWARE
THR G:138 , LYS G:369 , ASP G:370 , HOH G:456 , HOH G:627
BINDING SITE FOR RESIDUE SO4 G 5
30
DC3
SOFTWARE
ARG B:378 , ARG G:60 , ASP G:61 , HOH G:498 , HOH G:532
BINDING SITE FOR RESIDUE GOL G 9
31
DC4
SOFTWARE
PHE H:98 , ILE H:122 , ASN H:146 , VAL H:147 , VAL H:150 , GLY H:200 , ARG H:201 , ILE H:202 , ASP H:221 , ARG H:222 , MET H:255 , PRO H:256 , ASN H:282 , ALA H:283 , ARG H:284 , ASP H:308 , HIS H:332 , SER H:334 , GLY H:335 , GLN H:376 , AZI H:403 , HOH H:543 , HOH H:544 , HOH H:546 , HOH H:547 , HOH H:548 , HOH H:549 , HOH H:550 , HOH H:551 , HOH H:553 , HOH H:554 , HOH H:555 , HOH H:625
BINDING SITE FOR RESIDUE NAD H 401
32
DC5
SOFTWARE
PRO H:97 , PHE H:98 , ILE H:122 , ASN H:146 , ARG H:284 , HIS H:332 , NAD H:401
BINDING SITE FOR RESIDUE AZI H 403
33
DC6
SOFTWARE
GOL H:12 , LYS H:115 , THR H:138 , LYS H:369 , HOH H:558
BINDING SITE FOR RESIDUE SO4 H 6
34
DC7
SOFTWARE
SO4 H:6 , TYR H:355 , GLU H:359 , PHE H:361 , TYR H:366 , HOH H:391 , HOH H:482
BINDING SITE FOR RESIDUE GOL H 12
35
DC8
SOFTWARE
HOH H:17 , TYR H:102 , THR H:104 , HIS H:126 , ASP H:128 , HOH H:556
BINDING SITE FOR RESIDUE GOL H 27
36
DC9
SOFTWARE
ILE I:122 , ASN I:146 , VAL I:147 , VAL I:150 , GLY I:200 , ARG I:201 , ILE I:202 , ASP I:221 , ARG I:222 , MET I:255 , PRO I:256 , ASN I:282 , ALA I:283 , ARG I:284 , ASP I:308 , VAL I:309 , HIS I:332 , SER I:334 , GLY I:335 , GLN I:376 , AZI I:403 , HOH I:521 , HOH I:522 , HOH I:524 , HOH I:525 , HOH I:526 , HOH I:527 , HOH I:528 , HOH I:529 , HOH I:531 , HOH I:532 , HOH I:613
BINDING SITE FOR RESIDUE NAD I 401
37
EC1
SOFTWARE
PRO I:97 , PHE I:98 , ILE I:122 , ASN I:146 , ARG I:284 , HIS I:332 , NAD I:401
BINDING SITE FOR RESIDUE AZI I 403
38
EC2
SOFTWARE
GOL I:13 , LYS I:115 , THR I:138 , LYS I:369 , HOH I:536
BINDING SITE FOR RESIDUE SO4 I 7
39
EC3
SOFTWARE
SO4 I:7 , ARG I:354 , TYR I:355 , GLU I:359 , PHE I:361 , TYR I:366 , HOH I:594
BINDING SITE FOR RESIDUE GOL I 13
40
EC4
SOFTWARE
LEU I:57 , LEU I:342 , ALA I:346 , HOH I:513
BINDING SITE FOR RESIDUE GOL I 19
41
EC5
SOFTWARE
TYR I:102 , HIS I:126 , ASP I:128 , HOH I:418 , HOH I:490 , HOH I:534
BINDING SITE FOR RESIDUE GOL I 23
42
EC6
SOFTWARE
HOH J:18 , PHE J:98 , ILE J:122 , ASN J:146 , VAL J:147 , VAL J:150 , GLY J:200 , ARG J:201 , ILE J:202 , ASP J:221 , ARG J:222 , MET J:255 , PRO J:256 , ASN J:282 , ARG J:284 , ASP J:308 , VAL J:309 , HIS J:332 , SER J:334 , GLY J:335 , GLN J:376 , AZI J:403 , HOH J:410 , HOH J:495 , HOH J:496 , HOH J:498 , HOH J:499 , HOH J:500 , HOH J:501 , HOH K:484 , HOH K:485
BINDING SITE FOR RESIDUE NAD J 401
43
EC7
SOFTWARE
PRO J:97 , PHE J:98 , ILE J:122 , ASN J:146 , ARG J:284 , HIS J:332 , NAD J:401
BINDING SITE FOR RESIDUE AZI J 403
44
EC8
SOFTWARE
ILE K:122 , ASN K:146 , VAL K:147 , VAL K:150 , GLY K:200 , ARG K:201 , ILE K:202 , ASP K:221 , ARG K:222 , MET K:255 , PRO K:256 , ASN K:282 , ALA K:283 , ARG K:284 , ASP K:308 , VAL K:309 , HIS K:332 , SER K:334 , GLY K:335 , GLN K:376 , AZI K:403 , HOH K:509 , HOH K:510 , HOH K:512 , HOH K:513 , HOH K:514 , HOH K:515 , HOH K:516 , HOH K:517 , HOH K:519 , HOH K:520 , HOH K:521 , HOH K:645
BINDING SITE FOR RESIDUE NAD K 401
45
EC9
SOFTWARE
PRO K:97 , PHE K:98 , ILE K:122 , ASN K:146 , ARG K:284 , HIS K:332 , NAD K:401
BINDING SITE FOR RESIDUE AZI K 403
46
FC1
SOFTWARE
HOH I:633 , GOL K:14 , LYS K:115 , THR K:138 , LYS K:369 , HOH K:524
BINDING SITE FOR RESIDUE SO4 K 8
47
FC2
SOFTWARE
SO4 K:8 , ARG K:354 , TYR K:355 , GLY K:358 , GLU K:359 , PHE K:361 , TYR K:366 , HOH K:629 , HOH K:630
BINDING SITE FOR RESIDUE GOL K 14
48
FC3
SOFTWARE
GLU J:364 , HOH J:405 , TYR K:366 , LYS K:369 , GLU K:372 , ALA K:374 , ARG K:378
BINDING SITE FOR RESIDUE GOL K 15
49
FC4
SOFTWARE
TYR K:102 , HIS K:126 , ASP K:128 , HOH K:522 , HOH K:624
BINDING SITE FOR RESIDUE GOL K 24
50
FC5
SOFTWARE
ILE L:122 , ASN L:146 , VAL L:147 , VAL L:150 , GLY L:200 , ARG L:201 , ILE L:202 , ASP L:221 , ARG L:222 , MET L:255 , PRO L:256 , ASN L:282 , ALA L:283 , ARG L:284 , ASP L:308 , VAL L:309 , HIS L:332 , SER L:334 , GLY L:335 , GLN L:376 , AZI L:403 , HOH L:547 , HOH L:548 , HOH L:550 , HOH L:551 , HOH L:552 , HOH L:553 , HOH L:554 , HOH L:555 , HOH L:557 , HOH L:558 , HOH L:559 , HOH L:610 , HOH L:615
BINDING SITE FOR RESIDUE NAD L 401
51
FC6
SOFTWARE
PRO L:97 , PHE L:98 , ILE L:122 , ASN L:146 , ARG L:284 , HIS L:332 , NAD L:401
BINDING SITE FOR RESIDUE AZI L 403
52
FC7
SOFTWARE
TYR L:102 , HIS L:126 , ASP L:128 , HOH L:388 , HOH L:560 , HOH L:644
BINDING SITE FOR RESIDUE GOL L 21
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(3, 36)
Info
All PROSITE Patterns/Profiles
1: D_2_HYDROXYACID_DH_1 (A:194-221,B:194-221,C:194-221,D:19...)
2: D_2_HYDROXYACID_DH_2 (A:244-266,B:244-266,C:244-266,D:24...)
3: D_2_HYDROXYACID_DH_3 (A:273-289,B:273-289,C:273-289,D:27...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
D_2_HYDROXYACID_DH_1
PS00065
D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature.
FDH_ARATH
200-227
12
A:194-221
B:194-221
C:194-221
D:194-221
E:194-221
F:194-221
G:194-221
H:194-221
I:194-221
J:194-221
K:194-221
L:194-221
2
D_2_HYDROXYACID_DH_2
PS00670
D-isomer specific 2-hydroxyacid dehydrogenases signature 2.
FDH_ARATH
250-272
12
A:244-266
B:244-266
C:244-266
D:244-266
E:244-266
F:244-266
G:244-266
H:244-266
I:244-266
J:244-266
K:244-266
L:244-266
3
D_2_HYDROXYACID_DH_3
PS00671
D-isomer specific 2-hydroxyacid dehydrogenases signature 3.
FDH_ARATH
279-295
12
A:273-289
B:273-289
C:273-289
D:273-289
E:273-289
F:273-289
G:273-289
H:273-289
I:273-289
J:273-289
K:273-289
L:273-289
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Chain G
Chain H
Chain I
Chain J
Chain K
Chain L
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (760 KB)
Header - Asym.Unit
Biol.Unit 1 (137 KB)
Header - Biol.Unit 1
Biol.Unit 2 (137 KB)
Header - Biol.Unit 2
Biol.Unit 3 (135 KB)
Header - Biol.Unit 3
Biol.Unit 4 (135 KB)
Header - Biol.Unit 4
Biol.Unit 5 (133 KB)
Header - Biol.Unit 5
Biol.Unit 6 (135 KB)
Header - Biol.Unit 6
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
3N7U
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help