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3N6H
Asym. Unit
Info
Asym.Unit (574 KB)
Biol.Unit 1 (563 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF MANDELATE RACEMASE/MUCONATE LACTONIZING PROTEIN FROM ACTINOBACILLUS SUCCINOGENES 130Z COMPLEXED WITH MAGNESIUM/SULFATE
Authors
:
V. N. Malashkevich, Y. Patskovsky, R. Toro, J. M. Sauder, S. K. Burley, S New York Sgx Research Center For Structural Genomics (Nysgx
Date
:
25 May 10 (Deposition) - 21 Jul 10 (Release) - 21 Jul 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Structural Genomics, Protein Structure Initiative, New York Structural Genomix Research Consortium, Nysgxrc, Enolase, Psi-2, New York Sgx Research Center For Structural Genomics, Isomerase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
V. N. Malashkevich, R. Toro, J. M. Sauder, S. K. Burley, S. C. Almo
Crystal Structure Of Mandelate Racemase/Muconate Lactonizin Protein From Actinobacillus Succinogenes 130Z Complexed Wit Magnesium/Sulfate
To Be Published
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Hetero Components
(4, 65)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
2d: MAGNESIUM ION (MGd)
3a: SELENOMETHIONINE (MSEa)
3aa: SELENOMETHIONINE (MSEaa)
3ab: SELENOMETHIONINE (MSEab)
3ac: SELENOMETHIONINE (MSEac)
3ad: SELENOMETHIONINE (MSEad)
3ae: SELENOMETHIONINE (MSEae)
3af: SELENOMETHIONINE (MSEaf)
3ag: SELENOMETHIONINE (MSEag)
3ah: SELENOMETHIONINE (MSEah)
3ai: SELENOMETHIONINE (MSEai)
3aj: SELENOMETHIONINE (MSEaj)
3ak: SELENOMETHIONINE (MSEak)
3al: SELENOMETHIONINE (MSEal)
3am: SELENOMETHIONINE (MSEam)
3an: SELENOMETHIONINE (MSEan)
3ao: SELENOMETHIONINE (MSEao)
3ap: SELENOMETHIONINE (MSEap)
3aq: SELENOMETHIONINE (MSEaq)
3ar: SELENOMETHIONINE (MSEar)
3as: SELENOMETHIONINE (MSEas)
3at: SELENOMETHIONINE (MSEat)
3au: SELENOMETHIONINE (MSEau)
3av: SELENOMETHIONINE (MSEav)
3aw: SELENOMETHIONINE (MSEaw)
3ax: SELENOMETHIONINE (MSEax)
3ay: SELENOMETHIONINE (MSEay)
3az: SELENOMETHIONINE (MSEaz)
3b: SELENOMETHIONINE (MSEb)
3ba: SELENOMETHIONINE (MSEba)
3bb: SELENOMETHIONINE (MSEbb)
3bc: SELENOMETHIONINE (MSEbc)
3bd: SELENOMETHIONINE (MSEbd)
3c: SELENOMETHIONINE (MSEc)
3d: SELENOMETHIONINE (MSEd)
3e: SELENOMETHIONINE (MSEe)
3f: SELENOMETHIONINE (MSEf)
3g: SELENOMETHIONINE (MSEg)
3h: SELENOMETHIONINE (MSEh)
3i: SELENOMETHIONINE (MSEi)
3j: SELENOMETHIONINE (MSEj)
3k: SELENOMETHIONINE (MSEk)
3l: SELENOMETHIONINE (MSEl)
3m: SELENOMETHIONINE (MSEm)
3n: SELENOMETHIONINE (MSEn)
3o: SELENOMETHIONINE (MSEo)
3p: SELENOMETHIONINE (MSEp)
3q: SELENOMETHIONINE (MSEq)
3r: SELENOMETHIONINE (MSEr)
3s: SELENOMETHIONINE (MSEs)
3t: SELENOMETHIONINE (MSEt)
3u: SELENOMETHIONINE (MSEu)
3v: SELENOMETHIONINE (MSEv)
3w: SELENOMETHIONINE (MSEw)
3x: SELENOMETHIONINE (MSEx)
3y: SELENOMETHIONINE (MSEy)
3z: SELENOMETHIONINE (MSEz)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
1
Ligand/Ion
CHLORIDE ION
2
MG
4
Ligand/Ion
MAGNESIUM ION
3
MSE
56
Mod. Amino Acid
SELENOMETHIONINE
4
SO4
4
Ligand/Ion
SULFATE ION
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:33 , PHE A:153 , LYS A:208 , ASN A:342 , HIS A:369 , ARG A:423 , HOH A:548 , HOH A:577
BINDING SITE FOR RESIDUE SO4 A 500
2
AC2
SOFTWARE
ASP A:236 , GLU A:261 , ASN A:290 , HOH A:547 , HOH A:576 , HOH A:588
BINDING SITE FOR RESIDUE MG A 501
3
AC3
SOFTWARE
ASN B:28 , HIS B:33 , LYS B:208 , HIS B:369 , ARG B:423 , HOH B:520
BINDING SITE FOR RESIDUE SO4 B 500
4
AC4
SOFTWARE
ASP B:236 , GLU B:261 , ASP B:262 , ASN B:290 , HOH B:458
BINDING SITE FOR RESIDUE MG B 501
5
AC5
SOFTWARE
ASN C:28 , HIS C:33 , PHE C:153 , LYS C:208 , ASN C:342 , HIS C:369 , ARG C:423 , HOH C:476 , HOH C:491
BINDING SITE FOR RESIDUE SO4 C 500
6
AC6
SOFTWARE
ASP C:236 , GLU C:261 , ASP C:262 , ASN C:290 , HOH C:478
BINDING SITE FOR RESIDUE MG C 501
7
AC7
SOFTWARE
ASN D:28 , HIS D:33 , PHE D:153 , LYS D:208 , ASN D:342 , HIS D:369 , ARG D:423
BINDING SITE FOR RESIDUE SO4 D 500
8
AC8
SOFTWARE
TYR D:151 , LYS D:208 , ASP D:236 , GLU D:261 , ASN D:290
BINDING SITE FOR RESIDUE MG D 501
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d3n6ha1 (A:7-138)
1b: SCOP_d3n6hc1 (C:7-138)
1c: SCOP_d3n6hd1 (D:7-138)
1d: SCOP_d3n6hb1 (B:6-138)
2a: SCOP_d3n6ha2 (A:139-448)
2b: SCOP_d3n6hb2 (B:139-449)
2c: SCOP_d3n6hc2 (C:139-447)
2d: SCOP_d3n6hd2 (D:139-448)
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Classes
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Enolase N-terminal domain-like
(211)
Superfamily
:
Enolase N-terminal domain-like
(211)
Family
:
automated matches
(123)
Protein domain
:
automated matches
(123)
Actinobacillus succinogenes [TaxId: 339671]
(4)
1a
d3n6ha1
A:7-138
1b
d3n6hc1
C:7-138
1c
d3n6hd1
D:7-138
1d
d3n6hb1
B:6-138
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Enolase C-terminal domain-like
(212)
Family
:
automated matches
(102)
Protein domain
:
automated matches
(102)
Actinobacillus succinogenes [TaxId: 339671]
(3)
2a
d3n6ha2
A:139-448
2b
d3n6hb2
B:139-449
2c
d3n6hc2
C:139-447
2d
d3n6hd2
D:139-448
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Sorry, no Info available
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Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_MR_MLE_N_3n6hD01 (D:25-138)
1b: PFAM_MR_MLE_N_3n6hD02 (D:25-138)
1c: PFAM_MR_MLE_N_3n6hD03 (D:25-138)
1d: PFAM_MR_MLE_N_3n6hD04 (D:25-138)
2a: PFAM_MR_MLE_3n6hD05 (D:220-290)
2b: PFAM_MR_MLE_3n6hD06 (D:220-290)
2c: PFAM_MR_MLE_3n6hD07 (D:220-290)
2d: PFAM_MR_MLE_3n6hD08 (D:220-290)
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Clans
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Families
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)
Organisms
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)
(
)
Clan
:
Enolase_N
(69)
Family
:
MR_MLE_N
(47)
Actinobacillus succinogenes (strain ATCC 55618 / 130Z)
(2)
1a
MR_MLE_N-3n6hD01
D:25-138
1b
MR_MLE_N-3n6hD02
D:25-138
1c
MR_MLE_N-3n6hD03
D:25-138
1d
MR_MLE_N-3n6hD04
D:25-138
Clan
:
Enolase_TIM
(82)
Family
:
MR_MLE
(48)
Actinobacillus succinogenes (strain ATCC 55618 / 130Z)
(2)
2a
MR_MLE-3n6hD05
D:220-290
2b
MR_MLE-3n6hD06
D:220-290
2c
MR_MLE-3n6hD07
D:220-290
2d
MR_MLE-3n6hD08
D:220-290
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