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3N5U
Asym. Unit
Info
Asym.Unit (104 KB)
Biol.Unit 1 (98 KB)
Biol.Unit 2 (51 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF AN RB C-TERMINAL PEPTIDE BOUND TO THE CATALYTIC SUBUNIT OF PP1
Authors
:
A. M. Hirschi, M. Cecchini, R. C. Steinhardt, F. A. Dick, S. M. Rubin
Date
:
25 May 10 (Deposition) - 11 Aug 10 (Release) - 27 Oct 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.20
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: A,C (1x)
Keywords
:
Retinoblastoma, Prb, Rb, Protein Phosphatase-1, Pp1, Phosphatase, Hydrolase, Transcription Regulation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Hirschi, M. Cecchini, R. C. Steinhardt, M. R. Schamber, F. A. Dick, S. M. Rubin
An Overlapping Kinase And Phosphatase Docking Site Regulate Activity Of The Retinoblastoma Protein.
Nat. Struct. Mol. Biol. V. 17 1051 2010
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Hetero Components
(2, 6)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
2a: MANGANESE (II) ION (MNa)
2b: MANGANESE (II) ION (MNb)
2c: MANGANESE (II) ION (MNc)
2d: MANGANESE (II) ION (MNd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
2
Ligand/Ion
CHLORIDE ION
2
MN
4
Ligand/Ion
MANGANESE (II) ION
[
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
MN A:2 , ASP A:64 , HIS A:66 , ASP A:92 , TYR A:272 , CL A:301
BINDING SITE FOR RESIDUE MN A 1
2
AC2
SOFTWARE
MN A:1 , ASP A:64 , ASP A:92 , ASN A:124 , HIS A:173 , HIS A:248 , CL A:301
BINDING SITE FOR RESIDUE MN A 2
3
AC3
SOFTWARE
CL B:2 , MN B:4 , ASP B:64 , HIS B:66 , ASP B:92 , TYR B:272
BINDING SITE FOR RESIDUE MN B 3
4
AC4
SOFTWARE
CL B:2 , MN B:3 , ASP B:64 , ASP B:92 , ASN B:124 , HIS B:173 , HIS B:248
BINDING SITE FOR RESIDUE MN B 4
5
AC5
SOFTWARE
MN A:1 , MN A:2 , ARG A:96 , HIS A:125 , ARG A:221
BINDING SITE FOR RESIDUE CL A 301
6
AC6
SOFTWARE
MN B:3 , MN B:4 , ARG B:96 , ASN B:124 , HIS B:125 , ARG B:221
BINDING SITE FOR RESIDUE CL B 2
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: SER_THR_PHOSPHATASE (A:121-126,B:121-126)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SER_THR_PHOSPHATASE
PS00125
Serine/threonine specific protein phosphatases signature.
PP1A_HUMAN
121-126
2
A:121-126
B:121-126
[
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Exons
(8, 15)
Info
All Exons
Exon 1.26c (C:873-879)
Exon 2.3a (A:7-19 | B:7-19)
Exon 2.4d (A:19-63 | B:19-63)
Exon 2.4f (A:63-140 | B:63-140)
Exon 2.5a (A:140-175 | B:140-175)
Exon 2.6a (A:175-249 | B:175-249)
Exon 2.6d (A:250-294 | B:250-294)
Exon 2.7c (A:295-300 | B:295-300)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.25/1.26c
02: Boundary 1.26c/1.27
03: Boundary -/2.3a
04: Boundary 2.3a/2.4d
05: Boundary 2.4d/2.4f
06: Boundary 2.4f/2.5a
07: Boundary 2.5a/2.6a
08: Boundary 2.6a/2.6d
09: Boundary 2.6d/2.7c
10: Boundary 2.7c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000267163
1b
ENSE00002199946
chr13:
48877911-48878185
275
RB_HUMAN
1-46
46
0
-
-
1.2
ENST00000267163
2
ENSE00000939664
chr13:
48881416-48881542
127
RB_HUMAN
46-88
43
0
-
-
1.3
ENST00000267163
3
ENSE00000939665
chr13:
48916735-48916850
116
RB_HUMAN
89-127
39
0
-
-
1.4
ENST00000267163
4
ENSE00000939666
chr13:
48919216-48919335
120
RB_HUMAN
127-167
41
0
-
-
1.5
ENST00000267163
5
ENSE00000939667
chr13:
48921961-48921999
39
RB_HUMAN
167-180
14
0
-
-
1.6
ENST00000267163
6
ENSE00000939668
chr13:
48923092-48923159
68
RB_HUMAN
180-203
24
0
-
-
1.7a
ENST00000267163
7a
ENSE00000939669
chr13:
48934153-48934263
111
RB_HUMAN
203-240
38
0
-
-
1.8b
ENST00000267163
8b
ENSE00000939670
chr13:
48936951-48937093
143
RB_HUMAN
240-287
48
0
-
-
1.9
ENST00000267163
9
ENSE00000939671
chr13:
48939030-48939107
78
RB_HUMAN
288-313
26
0
-
-
1.10
ENST00000267163
10
ENSE00000939672
chr13:
48941630-48941739
110
RB_HUMAN
314-350
37
0
-
-
1.11
ENST00000267163
11
ENSE00000939673
chr13:
48942663-48942740
78
RB_HUMAN
350-376
27
0
-
-
1.12
ENST00000267163
12
ENSE00000939674
chr13:
48947541-48947628
88
RB_HUMAN
376-405
30
0
-
-
1.13
ENST00000267163
13
ENSE00000939675
chr13:
48951054-48951170
117
RB_HUMAN
406-444
39
0
-
-
1.14
ENST00000267163
14
ENSE00000939676
chr13:
48953730-48953786
57
RB_HUMAN
445-463
19
0
-
-
1.15
ENST00000267163
15
ENSE00000939677
chr13:
48954189-48954220
32
RB_HUMAN
464-474
11
0
-
-
1.16
ENST00000267163
16
ENSE00000939678
chr13:
48954301-48954377
77
RB_HUMAN
474-500
27
0
-
-
1.17
ENST00000267163
17
ENSE00000939679
chr13:
48955383-48955579
197
RB_HUMAN
500-565
66
0
-
-
1.19
ENST00000267163
19
ENSE00000939680
chr13:
49027129-49027247
119
RB_HUMAN
566-605
40
0
-
-
1.20b
ENST00000267163
20b
ENSE00000939681
chr13:
49030340-49030485
146
RB_HUMAN
605-654
50
0
-
-
1.21
ENST00000267163
21
ENSE00000939682
chr13:
49033824-49033969
146
RB_HUMAN
654-702
49
0
-
-
1.22
ENST00000267163
22
ENSE00000939683
chr13:
49037867-49037971
105
RB_HUMAN
703-737
35
0
-
-
1.23
ENST00000267163
23
ENSE00000939684
chr13:
49039134-49039247
114
RB_HUMAN
738-775
38
0
-
-
1.24
ENST00000267163
24
ENSE00000939685
chr13:
49039341-49039504
164
RB_HUMAN
776-830
55
0
-
-
1.25
ENST00000267163
25
ENSE00001003962
chr13:
49047496-49047526
31
RB_HUMAN
830-840
11
0
-
-
1.26c
ENST00000267163
26c
ENSE00000939686
chr13:
49050837-49050979
143
RB_HUMAN
841-888
48
1
C:873-879
7
1.27
ENST00000267163
27
ENSE00000939687
chr13:
49051491-49051540
50
RB_HUMAN
888-905
18
0
-
-
1.28c
ENST00000267163
28c
ENSE00001241067
chr13:
49054134-49056122
1989
RB_HUMAN
905-928
24
0
-
-
2.3a
ENST00000376745
3a
ENSE00001471548
chr11:
67169402-67169199
204
PP1A_HUMAN
1-19
19
2
A:7-19
B:7-19
13
13
2.4d
ENST00000376745
4d
ENSE00001212206
chr11:
67168670-67168539
132
PP1A_HUMAN
19-63
45
2
A:19-63
B:19-63
45
45
2.4f
ENST00000376745
4f
ENSE00001741927
chr11:
67168390-67168160
231
PP1A_HUMAN
63-140
78
2
A:63-140
B:63-140
78
78
2.5a
ENST00000376745
5a
ENSE00001186176
chr11:
67167136-67167032
105
PP1A_HUMAN
140-175
36
2
A:140-175
B:140-175
36
36
2.6a
ENST00000376745
6a
ENSE00001186169
chr11:
67166634-67166411
224
PP1A_HUMAN
175-249
75
2
A:175-249
B:175-249
75
75
2.6d
ENST00000376745
6d
ENSE00001707059
chr11:
67166327-67166193
135
PP1A_HUMAN
250-294
45
2
A:250-294
B:250-294
45
45
2.7c
ENST00000376745
7c
ENSE00002183271
chr11:
67166116-67165672
445
PP1A_HUMAN
295-330
36
2
A:295-300
B:295-300
6
6
[
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SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(2, 3)
Info
all PFAM domains
1a: PFAM_Metallophos_3n5uB01 (B:57-252)
1b: PFAM_Metallophos_3n5uB02 (B:57-252)
2a: PFAM_Rb_C_3n5uC01 (C:873-879)
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Clans
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Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Calcineurin
(56)
Family
:
Metallophos
(45)
Homo sapiens (Human)
(15)
1a
Metallophos-3n5uB01
B:57-252
1b
Metallophos-3n5uB02
B:57-252
Clan
:
no clan defined [family: Rb_C]
(5)
Family
:
Rb_C
(5)
Homo sapiens (Human)
(5)
2a
Rb_C-3n5uC01
C:873-879
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