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3N5N
Asym. Unit
Info
Asym.Unit (182 KB)
Biol.Unit 1 (88 KB)
Biol.Unit 2 (89 KB)
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(1)
Title
:
CRYSTAL STRUCTURE ANALYSIS OF THE CATALYTIC DOMAIN AND INTERDOMAIN CONNECTOR OF HUMAN MUTY HOMOLOGUE
Authors
:
E. A. Toth, P. J. Luncsford
Date
:
25 May 10 (Deposition) - 10 Nov 10 (Release) - 10 Nov 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : X,Y
Biol. Unit 1: X (1x)
Biol. Unit 2: Y (1x)
Keywords
:
Alpha-Helices, Helix-Hairpin-Helix Motif, Iron-Sulfur Cluster, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. J. Luncsford, D. Y. Chang, G. Shi, J. Bernstein, A. Madabushi, D. N. Patterson, A. L. Lu, E. A. Toth
A Structural Hinge In Eukaryotic Muty Homologues Mediates Catalytic Activity And Rad9-Rad1-Hus1 Checkpoint Complex Interactions.
J. Mol. Biol. V. 403 351 2010
[
close entry info
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Hetero Components
(2, 3)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
2a: IRON/SULFUR CLUSTER (SF4a)
2b: IRON/SULFUR CLUSTER (SF4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
1
Ligand/Ion
ACETATE ION
2
SF4
2
Ligand/Ion
IRON/SULFUR CLUSTER
[
close Hetero Component info
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS X:276 , CYS X:283 , CYS X:286 , CYS X:292
BINDING SITE FOR RESIDUE SF4 X 400
2
AC2
SOFTWARE
ARG Y:231 , VAL Y:232 , CYS Y:276 , CYS Y:283 , CYS Y:286 , CYS Y:292
BINDING SITE FOR RESIDUE SF4 Y 400
3
AC3
SOFTWARE
GLY Y:184
BINDING SITE FOR RESIDUE ACT Y 2
[
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SAPs(SNPs)/Variants
(8, 16)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_026045 (Y114H, chain X/Y, )
2: VAR_026046 (W117R, chain X/Y, )
3: VAR_018873 (Y165C, chain X/Y, )
4: VAR_064939 (R168C, chain X/Y, )
5: VAR_026047 (R168H, chain X/Y, )
6: VAR_064940 (R171W, chain X/Y, )
7: VAR_026048 (R227W, chain X/Y, )
8: VAR_018874 (Q324H, chain X/Y, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_026045
Y
125
H
MUTYH_HUMAN
Disease (FAP2)
---
X/Y
Y
114
H
2
UniProt
VAR_026046
W
128
R
MUTYH_HUMAN
Disease (FAP2)
---
X/Y
W
117
R
3
UniProt
VAR_018873
Y
176
C
MUTYH_HUMAN
Disease (FAP2)
34612342
X/Y
Y
165
C
4
UniProt
VAR_064939
R
179
C
MUTYH_HUMAN
Disease (FAP2)
---
X/Y
R
168
C
5
UniProt
VAR_026047
R
179
H
MUTYH_HUMAN
Disease (FAP2)
---
X/Y
R
168
H
6
UniProt
VAR_064940
R
182
W
MUTYH_HUMAN
Disease (FAP2)
---
X/Y
R
171
W
7
UniProt
VAR_026048
R
238
W
MUTYH_HUMAN
Disease (FAP2)
34126013
X/Y
R
227
W
8
UniProt
VAR_018874
Q
335
H
MUTYH_HUMAN
Polymorphism
3219489
X/Y
Q
324
H
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: ENDONUCLEASE_III_2 (X:185-215,Y:185-215)
2: ENDONUCLEASE_III_1 (X:276-292,Y:276-292)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ENDONUCLEASE_III_2
PS01155
Endonuclease III family signature.
MUTYH_HUMAN
196-226
2
X:185-215
Y:185-215
2
ENDONUCLEASE_III_1
PS00764
Endonuclease III iron-sulfur binding region signature.
MUTYH_HUMAN
287-303
2
X:276-292
Y:276-292
[
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]
Exons
(10, 20)
Info
All Exons
Exon 1.5b (X:68-102 | Y:68-102)
Exon 1.6a (X:103-116 | Y:103-116)
Exon 1.6f (X:116-140 | Y:116-140)
Exon 1.6j (X:141-154 | Y:141-154)
Exon 1.6l (X:155-178 | Y:155-178)
Exon 1.6p (X:179-216 | Y:179-216)
Exon 1.7b (X:217-249 | Y:217-249)
Exon 1.8e (X:249-297 | Y:249-297)
Exon 1.9c (X:298-319 (gaps) | Y:298-319 (gaps...)
Exon 1.9i (X:319-343 | Y:319-343)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.4a/1.5b
02: Boundary 1.5b/1.6a
03: Boundary 1.6a/1.6f
04: Boundary 1.6f/1.6j
05: Boundary 1.6j/1.6l
06: Boundary 1.6l/1.6p
07: Boundary 1.6p/1.7b
08: Boundary 1.7b/1.8e
09: Boundary 1.8e/1.9c
10: Boundary 1.9c/1.9i
11: Boundary 1.9i/1.10
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1g
ENST00000372098
1g
ENSE00002161599
chr1:
45806060-45805891
170
MUTYH_HUMAN
1-12
12
0
-
-
1.4a
ENST00000372098
4a
ENSE00001653183
chr1:
45800183-45800063
121
MUTYH_HUMAN
13-53
41
0
-
-
1.5b
ENST00000372098
5b
ENSE00001212332
chr1:
45799266-45799085
182
MUTYH_HUMAN
53-113
61
2
X:68-102
Y:68-102
35
35
1.6a
ENST00000372098
6a
ENSE00001141324
chr1:
45798996-45798957
40
MUTYH_HUMAN
114-127
14
2
X:103-116
Y:103-116
14
14
1.6f
ENST00000372098
6f
ENSE00001141319
chr1:
45798842-45798769
74
MUTYH_HUMAN
127-151
25
2
X:116-140
Y:116-140
25
25
1.6j
ENST00000372098
6j
ENSE00001141314
chr1:
45798631-45798590
42
MUTYH_HUMAN
152-165
14
2
X:141-154
Y:141-154
14
14
1.6l
ENST00000372098
6l
ENSE00001141306
chr1:
45798506-45798435
72
MUTYH_HUMAN
166-189
24
2
X:155-178
Y:155-178
24
24
1.6p
ENST00000372098
6p
ENSE00001141299
chr1:
45798359-45798246
114
MUTYH_HUMAN
190-227
38
2
X:179-216
Y:179-216
38
38
1.7b
ENST00000372098
7b
ENSE00002189978
chr1:
45798160-45798063
98
MUTYH_HUMAN
228-260
33
2
X:217-249
Y:217-249
33
33
1.8e
ENST00000372098
8e
ENSE00001141285
chr1:
45797982-45797838
145
MUTYH_HUMAN
260-308
49
2
X:249-297
Y:249-297
49
49
1.9c
ENST00000372098
9c
ENSE00001141279
chr1:
45797758-45797695
64
MUTYH_HUMAN
309-330
22
2
X:298-319 (gaps)
Y:298-319 (gaps)
22
22
1.9i
ENST00000372098
9i
ENSE00001767258
chr1:
45797521-45797333
189
MUTYH_HUMAN
330-393
64
2
X:319-343
Y:319-343
25
25
1.10
ENST00000372098
10
ENSE00001689447
chr1:
45797228-45797092
137
MUTYH_HUMAN
393-438
46
0
-
-
1.11a
ENST00000372098
11a
ENSE00001640025
chr1:
45797006-45796854
153
MUTYH_HUMAN
439-489
51
0
-
-
1.12
ENST00000372098
12
ENSE00001599383
chr1:
45796229-45796188
42
MUTYH_HUMAN
490-503
14
0
-
-
1.14g
ENST00000372098
14g
ENSE00001456937
chr1:
45795109-45794914
196
MUTYH_HUMAN
504-546
43
0
-
-
[
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]
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_HhH_GPD_3n5nY01 (Y:118-254)
1b: PFAM_HhH_GPD_3n5nY02 (Y:118-254)
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Clans
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)
(
)
Organisms
(
)
(
)
Clan
:
HHH
(112)
Family
:
HhH-GPD
(47)
Homo sapiens (Human)
(22)
1a
HhH-GPD-3n5nY01
Y:118-254
1b
HhH-GPD-3n5nY02
Y:118-254
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