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3N5K
Biol. Unit 1
Info
Asym.Unit (669 KB)
Biol.Unit 1 (336 KB)
Biol.Unit 2 (332 KB)
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(1)
Title
:
STRUCTURE OF THE (SR)CA2+-ATPASE E2-ALF4- FORM
Authors
:
M. Bublitz, C. Olesen, H. Poulsen, J. P. Morth, J. V. Moller, P. Nissen
Date
:
25 May 10 (Deposition) - 08 Jun 11 (Release) - 19 Mar 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Serca, Adenosine Triphosphate, Calcium-Transporting Atpases, Thapsigargin, Hydrolase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
M. Bublitz, M. Musgaard, H. Poulsen, L. Thogersen, C. Olesen, B. Schiott, J. P. Morth, J. V. Moller, P. Nissen
Ion Pathways In The Sarcoplasmic Reticulum Ca2+-Atpase.
J. Biol. Chem. V. 288 10759 2013
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Hetero Components
(3, 4)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
2a: TETRAFLUOROALUMINATE ION (ALFa)
2b: TETRAFLUOROALUMINATE ION (ALFb)
3a: POTASSIUM ION (Ka)
3b: POTASSIUM ION (Kb)
4a: MAGNESIUM ION (MGa)
4b: MAGNESIUM ION (MGb)
5a: OCTANOIC ACID [3S-[3ALPHA, 3ABETA,... (TG1a)
5b: OCTANOIC ACID [3S-[3ALPHA, 3ABETA,... (TG1b)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ACT
2
Ligand/Ion
ACETATE ION
2
ALF
1
Ligand/Ion
TETRAFLUOROALUMINATE ION
3
K
-1
Ligand/Ion
POTASSIUM ION
4
MG
-1
Ligand/Ion
MAGNESIUM ION
5
TG1
1
Ligand/Ion
OCTANOIC ACID [3S-[3ALPHA, 3ABETA, 4ALPHA, 6BETA,6ABETA, 7BETA, 8ALPHA(Z), 9BALPHA]]-6-(ACETYLOXY)-2,3,-3A,4,5,6,6A,7,8,9B-DECAHYDRO-3,3A-DIHYDROXY-3,6,9-TRIMETHYL-8-[(2-METHYL-1-OXO-2-BUTENYL)OXY]-2-OXO-4-(1-OXOBUTOXY)-AZULENO[4,5-B]FURAN-7-YL ESTER
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LEU A:253 , GLU A:255 , PHE A:256 , GLN A:259 , LEU A:260 , VAL A:263 , ILE A:267 , ILE A:765 , ASN A:768 , VAL A:769 , VAL A:772 , PHE A:776 , ILE A:829 , PHE A:834 , TYR A:837 , HOH A:1417 , HOH A:1423
BINDING SITE FOR RESIDUE TG1 A 1000
2
AC2
SOFTWARE
ASP A:351 , THR A:353 , ASP A:703 , HOH A:1279 , HOH A:1366 , ALF A:2002
BINDING SITE FOR RESIDUE MG A 2001
3
AC3
SOFTWARE
THR A:181 , GLY A:182 , ASP A:351 , LYS A:352 , THR A:353 , ILE A:624 , THR A:625 , GLY A:626 , LYS A:684 , ASN A:706 , HOH A:1279 , HOH A:1365 , HOH A:1366 , MG A:2001
BINDING SITE FOR RESIDUE ALF A 2002
4
AC4
SOFTWARE
GLN A:244 , LEU A:711 , LYS A:712 , ALA A:714 , GLU A:732 , HOH A:1107
BINDING SITE FOR RESIDUE K A 2003
5
AC5
SOFTWARE
SER A:170 , THR A:171 , THR A:172 , ARG A:174 , ALA A:216 , GLU A:486 , HOH A:1318
BINDING SITE FOR RESIDUE ACT A 3001
6
AC6
SOFTWARE
ASN A:39 , PRO A:160 , ALA A:161 , SER A:210 , GLY A:227 , THR A:230 , ILE A:232 , HOH A:1082
BINDING SITE FOR RESIDUE ACT A 3002
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: ATPASE_E1_E2 (A:351-357)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ATPASE_E1_E2
PS00154
E1-E2 ATPases phosphorylation site.
AT2A1_RABIT
351-357
1
A:351-357
-
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Exons
(0, 0)
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All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(4, 8)
Info
All SCOP Domains
1a: SCOP_d3n5ka2 (A:125-239)
1b: SCOP_d3n5kb2 (B:125-239)
2a: SCOP_d3n5ka4 (A:361-599)
2b: SCOP_d3n5kb4 (B:361-599)
3a: SCOP_d3n5ka3 (A:344-360,A:600-750)
3b: SCOP_d3n5kb3 (B:344-360,B:600-750)
4a: SCOP_d3n5ka1 (A:1-124,A:240-343,A:751-994)
4b: SCOP_d3n5kb1 (B:1-124,B:240-343,B:751-994)
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Classes
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Folds
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(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Double-stranded beta-helix
(580)
Superfamily
:
Calcium ATPase, transduction domain A
(37)
Family
:
Calcium ATPase, transduction domain A
(37)
Protein domain
:
Calcium ATPase, transduction domain A
(37)
Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
(37)
1a
d3n5ka2
A:125-239
1b
d3n5kb2
B:125-239
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Metal cation-transporting ATPase, ATP-binding domain N
(45)
Superfamily
:
Metal cation-transporting ATPase, ATP-binding domain N
(45)
Family
:
Metal cation-transporting ATPase, ATP-binding domain N
(45)
Protein domain
:
Calcium ATPase
(37)
Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
(37)
2a
d3n5ka4
A:361-599
2b
d3n5kb4
B:361-599
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
HAD-like
(349)
Superfamily
:
HAD-like
(349)
Family
:
Meta-cation ATPase, catalytic domain P
(38)
Protein domain
:
Calcium ATPase, catalytic domain P
(37)
Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
(37)
3a
d3n5ka3
A:344-360,A:600-750
3b
d3n5kb3
B:344-360,B:600-750
Class
:
Membrane and cell surface proteins and peptides
(2046)
Fold
:
Calcium ATPase, transmembrane domain M
(37)
Superfamily
:
Calcium ATPase, transmembrane domain M
(37)
Family
:
Calcium ATPase, transmembrane domain M
(37)
Protein domain
:
Calcium ATPase, transmembrane domain M
(37)
Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
(37)
4a
d3n5ka1
A:1-124,A:240-343,A:751-994
4b
d3n5kb1
B:1-124,B:240-343,B:751-994
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
(4, 8)
Info
all PFAM domains
1a: PFAM_Hydrolase_3n5kB01 (B:345-715)
1b: PFAM_Hydrolase_3n5kB02 (B:345-715)
2a: PFAM_Cation_ATPase_C_3n5kB03 (B:784-987)
2b: PFAM_Cation_ATPase_C_3n5kB04 (B:784-987)
3a: PFAM_Cation_ATPase_N_3n5kB05 (B:4-72)
3b: PFAM_Cation_ATPase_N_3n5kB06 (B:4-72)
4a: PFAM_E1_E2_ATPase_3n5kB07 (B:93-341)
4b: PFAM_E1_E2_ATPase_3n5kB08 (B:93-341)
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Clans
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(
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Families
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)
(
)
Organisms
(
)
(
)
Clan
:
HAD
(186)
Family
:
Hydrolase
(64)
Oryctolagus cuniculus (Rabbit)
(16)
1a
Hydrolase-3n5kB01
B:345-715
1b
Hydrolase-3n5kB02
B:345-715
Clan
:
no clan defined [family: Cation_ATPase_C]
(21)
Family
:
Cation_ATPase_C
(21)
Oryctolagus cuniculus (Rabbit)
(17)
2a
Cation_ATPase_C-3n5kB03
B:784-987
2b
Cation_ATPase_C-3n5kB04
B:784-987
Clan
:
no clan defined [family: Cation_ATPase_N]
(22)
Family
:
Cation_ATPase_N
(22)
Oryctolagus cuniculus (Rabbit)
(17)
3a
Cation_ATPase_N-3n5kB05
B:4-72
3b
Cation_ATPase_N-3n5kB06
B:4-72
Clan
:
no clan defined [family: E1-E2_ATPase]
(23)
Family
:
E1-E2_ATPase
(23)
Oryctolagus cuniculus (Rabbit)
(17)
4a
E1-E2_ATPase-3n5kB07
B:93-341
4b
E1-E2_ATPase-3n5kB08
B:93-341
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