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3N45
Asym. Unit
Info
Asym.Unit (67 KB)
Biol.Unit 1 (122 KB)
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(1)
Title
:
HUMAN FPPS COMPLEX WITH FBS_04 AND ZOLEDRONIC ACID/MG2+
Authors
:
J. -M. Rondeau
Date
:
21 May 10 (Deposition) - 18 Aug 10 (Release) - 01 Sep 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.88
Chains
:
Asym. Unit : F
Biol. Unit 1: F (2x)
Keywords
:
Bisphosphonate; Fragment-Based Screening; Transferase; Isoprene Biosynthesis; Cholesterol Biosynthesis, Transferase, Transferase- Transferase Inhibiator Complex, Transferase-Transferase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
W. Jahnke, J. M. Rondeau, S. Cotesta, A. Marzinzik, X. Pelle, M. Geiser A. Strauss, M. Gotte, F. Bitsch, R. Hemmig, C. Henry, S. Lehmann, J. F. Glickman, T. P. Roddy, S. J. Stout, J. R. Green
Allosteric Non-Bisphosphonate Fpps Inhibitors Identified By Fragment-Based Discovery.
Nat. Chem. Biol. V. 6 660 2010
(for further references see the
PDB file header
)
[
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Hetero Components
(4, 7)
Info
All Hetero Components
1a: (2S)-1-[(BENZYLOXY)CARBONYL]-2,3-D... (3N3a)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
3a: PHOSPHATE ION (PO4a)
3b: PHOSPHATE ION (PO4b)
4a: ZOLEDRONIC ACID (ZOLa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
3N3
1
Ligand/Ion
(2S)-1-[(BENZYLOXY)CARBONYL]-2,3-DIHYDRO-1H-INDOLE-2-CARBOXYLIC ACID
2
MG
3
Ligand/Ion
MAGNESIUM ION
3
PO4
2
Ligand/Ion
PHOSPHATE ION
4
ZOL
1
Ligand/Ion
ZOLEDRONIC ACID
[
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]
Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS F:57 , ASN F:59 , ARG F:60 , SER F:205 , PHE F:206 , PHE F:239 , GLN F:242 , LEU F:246 , LEU F:344 , LYS F:347 , ILE F:348 , PO4 F:356 , HOH F:484
BINDING SITE FOR RESIDUE 3N3 F 1
2
AC2
SOFTWARE
MG F:2 , MG F:3 , ASP F:103 , ASP F:107 , ARG F:112 , GLN F:171 , LYS F:200 , THR F:201 , GLN F:240 , ASP F:243 , LYS F:257 , MG F:355 , PO4 F:357 , HOH F:358 , HOH F:360 , HOH F:361 , HOH F:363 , HOH F:364 , HOH F:365 , HOH F:366 , HOH F:373 , HOH F:374 , HOH F:379
BINDING SITE FOR RESIDUE ZOL F 354
3
AC3
SOFTWARE
MG F:3 , ASP F:103 , ASP F:107 , ZOL F:354 , HOH F:358 , HOH F:361
BINDING SITE FOR RESIDUE MG F 355
4
AC4
SOFTWARE
ASP F:243 , ZOL F:354 , HOH F:363 , HOH F:365 , HOH F:374
BINDING SITE FOR RESIDUE MG F 2
5
AC5
SOFTWARE
ASP F:103 , ASP F:107 , ZOL F:354 , MG F:355 , HOH F:359 , HOH F:360 , HOH F:364
BINDING SITE FOR RESIDUE MG F 3
6
AC6
SOFTWARE
3N3 F:1 , GLY F:56 , LYS F:57 , ARG F:60 , GLN F:96 , ARG F:113 , PO4 F:357 , HOH F:382 , HOH F:420 , HOH F:442 , HOH F:484
BINDING SITE FOR RESIDUE PO4 F 356
7
AC7
SOFTWARE
ARG F:60 , GLN F:96 , ARG F:112 , PHE F:239 , LYS F:257 , ZOL F:354 , PO4 F:356 , HOH F:382 , HOH F:392
BINDING SITE FOR RESIDUE PO4 F 357
[
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SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_061274 (V298A, chain F, )
2: VAR_049644 (I325V, chain F, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_061274
V
364
A
FPPS_HUMAN
Polymorphism
41314549
F
V
298
A
2
UniProt
VAR_049644
I
391
V
FPPS_HUMAN
Polymorphism
17456
F
I
325
V
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: POLYPRENYL_SYNTHASE_1 (F:100-114)
2: POLYPRENYL_SYNTHASE_2 (F:235-247)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
POLYPRENYL_SYNTHASE_1
PS00723
Polyprenyl synthases signature 1.
FPPS_HUMAN
166-180
1
F:100-114
2
POLYPRENYL_SYNTHASE_2
PS00444
Polyprenyl synthases signature 2.
FPPS_HUMAN
301-313
1
F:235-247
[
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Exons
(9, 9)
Info
All Exons
Exon 1.1r (F:8-47)
Exon 1.3a (F:48-94)
Exon 1.4b (F:95-121)
Exon 1.5b (F:122-162)
Exon 1.5i (F:163-192)
Exon 1.5m (F:192-216)
Exon 1.6b (F:217-242)
Exon 1.6e (F:243-287)
Exon 1.7b (F:288-350)
View:
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All Exon Boundaries
01: Boundary 1.1q/1.1r
02: Boundary 1.1r/1.3a
03: Boundary 1.3a/1.4b
04: Boundary 1.4b/1.5b
05: Boundary 1.5b/1.5i
06: Boundary 1.5i/1.5m
07: Boundary 1.5m/1.6b
08: Boundary 1.6b/1.6e
09: Boundary 1.6e/1.7b
10: Boundary 1.7b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1e
ENST00000368356
1e
ENSE00001876084
chr1:
155278643-155278756
114
FPPS_HUMAN
-
0
0
-
-
1.1q
ENST00000368356
1q
ENSE00001446957
chr1:
155279580-155279756
177
FPPS_HUMAN
1-59
59
0
-
-
1.1r
ENST00000368356
1r
ENSE00001054179
chr1:
155279834-155279996
163
FPPS_HUMAN
59-113
55
1
F:8-47
40
1.3a
ENST00000368356
3a
ENSE00001054180
chr1:
155282046-155282186
141
FPPS_HUMAN
114-160
47
1
F:48-94
47
1.4b
ENST00000368356
4b
ENSE00001054186
chr1:
155287732-155287812
81
FPPS_HUMAN
161-187
27
1
F:95-121
27
1.5b
ENST00000368356
5b
ENSE00001054182
chr1:
155287960-155288082
123
FPPS_HUMAN
188-228
41
1
F:122-162
41
1.5i
ENST00000368356
5i
ENSE00001054185
chr1:
155288456-155288544
89
FPPS_HUMAN
229-258
30
1
F:163-192
30
1.5m
ENST00000368356
5m
ENSE00001054184
chr1:
155288647-155288719
73
FPPS_HUMAN
258-282
25
1
F:192-216
25
1.6b
ENST00000368356
6b
ENSE00001054176
chr1:
155289402-155289479
78
FPPS_HUMAN
283-308
26
1
F:217-242
26
1.6e
ENST00000368356
6e
ENSE00001054178
chr1:
155289585-155289719
135
FPPS_HUMAN
309-353
45
1
F:243-287
45
1.7b
ENST00000368356
7b
ENSE00001939089
chr1:
155290200-155290456
257
FPPS_HUMAN
354-419
66
1
F:288-350
63
[
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]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3n45f_ (F:)
View:
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Classes
(
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(
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Folds
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Superfamilies
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(
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Terpenoid synthases
(196)
Superfamily
:
Terpenoid synthases
(196)
Family
:
Isoprenyl diphosphate synthases
(57)
Protein domain
:
automated matches
(38)
Human (Homo sapiens) [TaxId: 9606]
(34)
1a
d3n45f_
F:
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_polyprenyl_synt_3n45F01 (F:44-316)
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Clans
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Families
(
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(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: polyprenyl_synt]
(86)
Family
:
polyprenyl_synt
(86)
Homo sapiens (Human)
(19)
1a
polyprenyl_synt-3n45F01
F:44-316
[
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]
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Protein & NOT Site
Protein & NOT PROSITE
Chain F
Asymmetric Unit 1
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