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3N44
Asym. Unit
Info
Asym.Unit (271 KB)
Biol.Unit 1 (263 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE MATURE ENVELOPE GLYCOPROTEIN COMPLEX (TRYPSIN CLEAVAGE; OSMIUM SOAK) OF CHIKUNGUNYA VIRUS.
Authors
:
J. Voss, M. C. Vaney, S. Duquerroy, F. A. Rey
Date
:
21 May 10 (Deposition) - 01 Dec 10 (Release) - 15 Dec 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.35
Chains
:
Asym. Unit : A,B,F
Biol. Unit 1: A,B,F (1x)
Keywords
:
Viral Protein, Immature Heterodimer, Alphavirus, Receptor Binding, Membrane Fusion
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. E. Voss, M. C. Vaney, S. Duquerroy, C. Vonrhein, C. Girard-Blanc, E. Crublet, A. Thompson, G. Bricogne, F. A. Rey
Glycoprotein Organization Of Chikungunya Virus Particles Revealed By X-Ray Crystallography.
Nature V. 468 709 2010
(for further references see the
PDB file header
)
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Hetero Components
(3, 11)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
2b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3a: OSMIUM ION (OSa)
3b: OSMIUM ION (OSb)
3c: OSMIUM ION (OSc)
3d: OSMIUM ION (OSd)
3e: OSMIUM ION (OSe)
3f: OSMIUM ION (OSf)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ACT
3
Ligand/Ion
ACETATE ION
2
NAG
2
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
3
OS
6
Ligand/Ion
OSMIUM ION
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU A:32 , THR B:196 , HIS B:232
BINDING SITE FOR RESIDUE ACT A 65
2
AC2
SOFTWARE
ASN B:263
BINDING SITE FOR RESIDUE NAG B 2001
3
AC3
SOFTWARE
HIS B:18
BINDING SITE FOR RESIDUE OS B 361
4
AC4
SOFTWARE
HIS B:142
BINDING SITE FOR RESIDUE OS B 362
5
AC5
SOFTWARE
HIS B:130
BINDING SITE FOR RESIDUE OS B 363
6
AC6
SOFTWARE
ARG F:134 , GLY F:139 , ASN F:141 , HOH F:563
BINDING SITE FOR RESIDUE NAG F 1001
7
AC7
SOFTWARE
ASP F:158 , ARG F:223 , ASP F:281
BINDING SITE FOR RESIDUE ACT F 452
8
AC8
SOFTWARE
SER F:77 , LYS F:79 , LEU F:219 , VAL F:220 , LEU F:221
BINDING SITE FOR RESIDUE ACT F 453
9
AC9
SOFTWARE
HIS B:73
BINDING SITE FOR RESIDUE OS F 454
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d3n44f2 (F:293-391)
2a: SCOP_d3n44f1 (F:1-292)
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Classes
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)
(
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
E set domains
(509)
Family
:
automated matches
(93)
Protein domain
:
automated matches
(93)
Chikungunya virus [TaxId: 37124]
(5)
1a
d3n44f2
F:293-391
Class
:
Membrane and cell surface proteins and peptides
(2046)
Fold
:
Viral glycoprotein, central and dimerisation domains
(24)
Superfamily
:
Viral glycoprotein, central and dimerisation domains
(24)
Family
:
automated matches
(7)
Protein domain
:
automated matches
(7)
Chikungunya virus [TaxId: 37124]
(2)
2a
d3n44f1
F:1-292
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
(3, 3)
Info
all PFAM domains
1a: PFAM_Alpha_E1_glycop_3n44F01 (F:1-391)
2a: PFAM_Alpha_E2_glycop_3n44B01 (B:14-341)
3a: PFAM_Alpha_E3_glycop_3n44A01 (A:7-58)
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Clans
(
)
(
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Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: Alpha_E1_glycop]
(11)
Family
:
Alpha_E1_glycop
(11)
Chikungunya virus (CHIKV)
(7)
1a
Alpha_E1_glycop-3n44F01
F:1-391
Clan
:
no clan defined [family: Alpha_E2_glycop]
(9)
Family
:
Alpha_E2_glycop
(9)
Chikungunya virus (CHIKV)
(7)
2a
Alpha_E2_glycop-3n44B01
B:14-341
Clan
:
no clan defined [family: Alpha_E3_glycop]
(5)
Family
:
Alpha_E3_glycop
(5)
Chikungunya virus (CHIKV)
(5)
3a
Alpha_E3_glycop-3n44A01
A:7-58
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Asymmetric Unit 1
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Asym.Unit (271 KB)
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