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3N35
Asym. Unit
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Asym.Unit (47 KB)
Biol.Unit 1 (43 KB)
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(1)
Title
:
ERYTHRINA CORALLODENDRON LECTIN MUTANT (Y106G) WITH N-ACETYLGALACTOSAMINE
Authors
:
S. Thamotharan, T. Karthikeyan, K. A. Kulkarni, K. N. Shetty, A. Suroli M. Vijayan, K. Suguna
Date
:
19 May 10 (Deposition) - 30 Mar 11 (Release) - 30 Mar 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Legume Lectin, Glycosylation, Erythrina Lectin, Sugar, Recombinant Lectin, Sugar Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Thamotharan, T. Karthikeyan, K. A. Kulkarni, K. N. Shetty, A. Surolia, M. Vijayan, K. Suguna
Modification Of The Sugar Specificity Of A Plant Lectin: Structural Studies On A Point Mutant Of Erythrina Corallodendron Lectin.
Acta Crystallogr. , Sect. D V. 67 218 2011
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Hetero Components
(3, 3)
Info
All Hetero Components
1a: N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE (A2Ga)
2a: CALCIUM ION (CAa)
3a: MANGANESE (II) ION (MNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
A2G
1
Ligand/Ion
N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE
2
CA
1
Ligand/Ion
CALCIUM ION
3
MN
1
Ligand/Ion
MANGANESE (II) ION
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU A:127 , ASP A:129 , ASP A:136 , HIS A:142 , HOH A:243 , HOH A:244
BINDING SITE FOR RESIDUE MN A 289
2
AC2
SOFTWARE
ASP A:129 , PHE A:131 , ASN A:133 , ASP A:136 , HOH A:245 , HOH A:246
BINDING SITE FOR RESIDUE CA A 290
3
AC3
SOFTWARE
ALA A:88 , ASP A:89 , GLY A:107 , GLN A:122 , ASN A:133 , GLY A:217 , ALA A:218 , GLN A:219 , HOH A:247 , HOH A:373 , HOH A:381
BINDING SITE FOR RESIDUE A2G A 401
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SAPs(SNPs)/Variants
(3, 3)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_LEC_ERYCO_001 (G22A, chain A, )
2: VAR_LEC_ERYCO_002 (Q134Q, chain A, )
3: VAR_LEC_ERYCO_003 (D199V, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_LEC_ERYCO_001
*
G
48
A
LEC_ERYCO
---
---
A
G
22
A
2
UniProt
VAR_LEC_ERYCO_002
*
P
160
Q
LEC_ERYCO
---
---
A
Q
134
Q
3
UniProt
VAR_LEC_ERYCO_003
*
D
225
V
LEC_ERYCO
---
---
A
D
199
V
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: LECTIN_LEGUME_BETA (A:124-130)
2: LECTIN_LEGUME_ALPHA (A:204-213)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LECTIN_LEGUME_BETA
PS00307
Legume lectins beta-chain signature.
LEC_ERYCO
150-156
1
A:124-130
2
LECTIN_LEGUME_ALPHA
PS00308
Legume lectins alpha-chain signature.
LEC_ERYCO
230-239
1
A:204-213
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Exons
(0, 0)
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All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3n35a_ (A:)
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Protein Domains
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Organisms
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Class
:
All beta proteins
(24004)
Fold
:
Concanavalin A-like lectins/glucanases
(797)
Superfamily
:
Concanavalin A-like lectins/glucanases
(797)
Family
:
Legume lectins
(238)
Protein domain
:
automated matches
(63)
Coral tree (Erythrina corallodendron) [TaxId: 3843]
(3)
1a
d3n35a_
A:
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Lectin_legB_3n35A01 (A:2-234)
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Organisms
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Clan
:
Concanavalin
(293)
Family
:
Lectin_legB
(93)
Erythrina corallodendrum (Coral tree)
(5)
1a
Lectin_legB-3n35A01
A:2-234
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Chain A
Asymmetric Unit 1
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Asym.Unit (47 KB)
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