PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
3N2J
Biol. Unit 9
Info
Asym.Unit (504 KB)
Biol.Unit 1 (46 KB)
Biol.Unit 10 (46 KB)
Biol.Unit 11 (46 KB)
Biol.Unit 12 (46 KB)
Biol.Unit 2 (46 KB)
Biol.Unit 3 (47 KB)
Biol.Unit 4 (46 KB)
Biol.Unit 5 (46 KB)
Biol.Unit 6 (46 KB)
Biol.Unit 7 (46 KB)
Biol.Unit 8 (46 KB)
Biol.Unit 9 (46 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
AZURIN H117G, OXIDIZED FORM
Authors
:
M. Hoffmann, S. Alagaratnam, G. W. Canters, O. Einsle
Date
:
18 May 10 (Deposition) - 06 Apr 11 (Release) - 14 Sep 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.35
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: F (1x)
Biol. Unit 7: G (1x)
Biol. Unit 8: H (1x)
Biol. Unit 9: I (1x)
Biol. Unit 10: J (1x)
Biol. Unit 11: K (1x)
Biol. Unit 12: L (1x)
Keywords
:
Copper Proteins, Electron Transfer, Pseudo-Translation, Electron Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Alagaratnam, N. J. Meeuwenoord, J. A. Navarro, M. Hervas, M. A. De La Rosa, M. Hoffmann, O. Einsle, M. Ubbink, G. W. Canters
Probing The Reactivity Of Different Forms Of Azurin By Flavin Photoreduction.
Febs J. V. 278 1506 2011
[
close entry info
]
Hetero Components
(0, 0)
Info
All Hetero Components
1a: COPPER (II) ION (CUa)
1b: COPPER (II) ION (CUb)
1c: COPPER (II) ION (CUc)
1d: COPPER (II) ION (CUd)
1e: COPPER (II) ION (CUe)
1f: COPPER (II) ION (CUf)
1g: COPPER (II) ION (CUg)
1h: COPPER (II) ION (CUh)
1i: COPPER (II) ION (CUi)
1j: COPPER (II) ION (CUj)
1k: COPPER (II) ION (CUk)
1l: COPPER (II) ION (CUl)
1m: COPPER (II) ION (CUm)
1n: COPPER (II) ION (CUn)
1o: COPPER (II) ION (CUo)
1p: COPPER (II) ION (CUp)
1q: COPPER (II) ION (CUq)
1r: COPPER (II) ION (CUr)
1s: COPPER (II) ION (CUs)
1t: COPPER (II) ION (CUt)
1u: COPPER (II) ION (CUu)
1v: COPPER (II) ION (CUv)
1w: COPPER (II) ION (CUw)
1x: COPPER (II) ION (CUx)
View:
Select:
Label:
Sorry, no Info available
[
close Hetero component info
]
Sites
(3, 3)
Info
All Sites
1: AC6 (SOFTWARE)
2: BC8 (SOFTWARE)
3: BC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC6
SOFTWARE
HIS C:83 , GLU I:2 , CYS I:3
BINDING SITE FOR RESIDUE CU C 131
2
BC8
SOFTWARE
GLY I:45 , HIS I:46 , CYS I:112 , MET I:121
BINDING SITE FOR RESIDUE CU I 130
3
BC9
SOFTWARE
HIS I:83 , HOH I:1412
BINDING SITE FOR RESIDUE CU I 131
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: COPPER_BLUE (I:105-121)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
COPPER_BLUE
PS00196
Type-1 copper (blue) proteins signature.
AZUR_PSEAE
125-141
1
-
-
-
-
-
-
-
-
I:105-121
-
-
-
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 12)
Info
All SCOP Domains
1a: SCOP_d3n2ja_ (A:)
1b: SCOP_d3n2je_ (E:)
1c: SCOP_d3n2jf_ (F:)
1d: SCOP_d3n2jg_ (G:)
1e: SCOP_d3n2jh_ (H:)
1f: SCOP_d3n2ji_ (I:)
1g: SCOP_d3n2jj_ (J:)
1h: SCOP_d3n2jk_ (K:)
1i: SCOP_d3n2jl_ (L:)
1j: SCOP_d3n2jb_ (B:)
1k: SCOP_d3n2jc_ (C:)
1l: SCOP_d3n2jd_ (D:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Cupredoxin-like
(545)
Superfamily
:
Cupredoxins
(543)
Family
:
Plastocyanin/azurin-like
(241)
Protein domain
:
Azurin
(95)
Pseudomonas aeruginosa [TaxId: 287]
(78)
1a
d3n2ja_
A:
1b
d3n2je_
E:
1c
d3n2jf_
F:
1d
d3n2jg_
G:
1e
d3n2jh_
H:
1f
d3n2ji_
I:
1g
d3n2jj_
J:
1h
d3n2jk_
K:
1i
d3n2jl_
L:
1j
d3n2jb_
B:
1k
d3n2jc_
C:
1l
d3n2jd_
D:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(1, 12)
Info
all PFAM domains
1a: PFAM_Copper_bind_3n2jL01 (L:1-128)
1b: PFAM_Copper_bind_3n2jL02 (L:1-128)
1c: PFAM_Copper_bind_3n2jL03 (L:1-128)
1d: PFAM_Copper_bind_3n2jL04 (L:1-128)
1e: PFAM_Copper_bind_3n2jL05 (L:1-128)
1f: PFAM_Copper_bind_3n2jL06 (L:1-128)
1g: PFAM_Copper_bind_3n2jL07 (L:1-128)
1h: PFAM_Copper_bind_3n2jL08 (L:1-128)
1i: PFAM_Copper_bind_3n2jL09 (L:1-128)
1j: PFAM_Copper_bind_3n2jL10 (L:1-128)
1k: PFAM_Copper_bind_3n2jL11 (L:1-128)
1l: PFAM_Copper_bind_3n2jL12 (L:1-128)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
CU_oxidase
(192)
Family
:
Copper-bind
(82)
Pseudomonas aeruginosa
(25)
1a
Copper-bind-3n2jL01
L:1-128
1b
Copper-bind-3n2jL02
L:1-128
1c
Copper-bind-3n2jL03
L:1-128
1d
Copper-bind-3n2jL04
L:1-128
1e
Copper-bind-3n2jL05
L:1-128
1f
Copper-bind-3n2jL06
L:1-128
1g
Copper-bind-3n2jL07
L:1-128
1h
Copper-bind-3n2jL08
L:1-128
1i
Copper-bind-3n2jL09
L:1-128
1j
Copper-bind-3n2jL10
L:1-128
1k
Copper-bind-3n2jL11
L:1-128
1l
Copper-bind-3n2jL12
L:1-128
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain I
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (504 KB)
Header - Asym.Unit
Biol.Unit 1 (46 KB)
Header - Biol.Unit 1
Biol.Unit 10 (46 KB)
Header - Biol.Unit 10
Biol.Unit 11 (46 KB)
Header - Biol.Unit 11
Biol.Unit 12 (46 KB)
Header - Biol.Unit 12
Biol.Unit 2 (46 KB)
Header - Biol.Unit 2
Biol.Unit 3 (47 KB)
Header - Biol.Unit 3
Biol.Unit 4 (46 KB)
Header - Biol.Unit 4
Biol.Unit 5 (46 KB)
Header - Biol.Unit 5
Biol.Unit 6 (46 KB)
Header - Biol.Unit 6
Biol.Unit 7 (46 KB)
Header - Biol.Unit 7
Biol.Unit 8 (46 KB)
Header - Biol.Unit 8
Biol.Unit 9 (46 KB)
Header - Biol.Unit 9
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
3N2J
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help