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3N1S
Biol. Unit 3
Info
Asym.Unit (189 KB)
Biol.Unit 1 (50 KB)
Biol.Unit 2 (48 KB)
Biol.Unit 3 (49 KB)
Biol.Unit 4 (50 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF WILD TYPE ECHINT GMP COMPLEX
Authors
:
V. Cody
Date
:
17 May 10 (Deposition) - 20 Oct 10 (Release) - 08 Dec 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.45
Chains
:
Asym. Unit : A,B,E,F,I,J,M,N
Biol. Unit 1: A,B (1x)
Biol. Unit 2: E,F (1x)
Biol. Unit 3: I,J (1x)
Biol. Unit 4: M,N (1x)
Keywords
:
Histidine Triad Nucleotide Binding Protein, Hint, Gmp, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Bardaweel, J. Pace, T. F. Chou, V. Cody, C. R. Wagner
Probing The Impact Of The Echint C-Terminal Domain On Structure And Catalysis.
J. Mol. Biol. V. 404 627 2010
[
close entry info
]
Hetero Components
(2, 8)
Info
All Hetero Components
1a: GUANOSINE-5'-MONOPHOSPHATE (5GPa)
1b: GUANOSINE-5'-MONOPHOSPHATE (5GPb)
1c: GUANOSINE-5'-MONOPHOSPHATE (5GPc)
1d: GUANOSINE-5'-MONOPHOSPHATE (5GPd)
1e: GUANOSINE-5'-MONOPHOSPHATE (5GPe)
1f: GUANOSINE-5'-MONOPHOSPHATE (5GPf)
1g: GUANOSINE-5'-MONOPHOSPHATE (5GPg)
1h: GUANOSINE-5'-MONOPHOSPHATE (5GPh)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
2k: 1,2-ETHANEDIOL (EDOk)
2l: 1,2-ETHANEDIOL (EDOl)
2m: 1,2-ETHANEDIOL (EDOm)
2n: 1,2-ETHANEDIOL (EDOn)
2o: 1,2-ETHANEDIOL (EDOo)
2p: 1,2-ETHANEDIOL (EDOp)
2q: 1,2-ETHANEDIOL (EDOq)
2r: 1,2-ETHANEDIOL (EDOr)
2s: 1,2-ETHANEDIOL (EDOs)
2t: 1,2-ETHANEDIOL (EDOt)
2u: 1,2-ETHANEDIOL (EDOu)
2v: 1,2-ETHANEDIOL (EDOv)
2w: 1,2-ETHANEDIOL (EDOw)
2x: 1,2-ETHANEDIOL (EDOx)
2y: 1,2-ETHANEDIOL (EDOy)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
5GP
2
Ligand/Ion
GUANOSINE-5'-MONOPHOSPHATE
2
EDO
6
Ligand/Ion
1,2-ETHANEDIOL
[
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC4 (SOFTWARE)
03: BC7 (SOFTWARE)
04: BC8 (SOFTWARE)
05: BC9 (SOFTWARE)
06: CC1 (SOFTWARE)
07: CC2 (SOFTWARE)
08: CC3 (SOFTWARE)
09: CC4 (SOFTWARE)
10: CC5 (SOFTWARE)
11: DC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ILE A:6 , PHE A:7 , ILE A:10 , PHE A:29 , ARG A:30 , ASP A:31 , ILE A:32 , LEU A:41 , ASN A:88 , GLY A:94 , GLU A:96 , VAL A:97 , HIS A:101 , HIS A:103 , HOH A:123 , HOH A:128 , HOH A:188 , HOH A:197 , HOH A:732 , HOH A:1131 , HOH J:137
BINDING SITE FOR RESIDUE 5GP A 201
02
AC4
SOFTWARE
ILE A:32 , PRO A:34 , HOH A:466 , PRO I:109 , GLY I:111 , LYS J:117 , GLY J:118
BINDING SITE FOR RESIDUE EDO A 122
03
BC7
SOFTWARE
PHE I:7 , PHE I:29 , ARG I:30 , ASP I:31 , ILE I:32 , LEU I:41 , ASN I:88 , GLY I:94 , GLN I:95 , GLU I:96 , VAL I:97 , HIS I:101 , HIS I:103 , EDO I:123 , HOH I:245 , HOH I:248 , HOH I:284 , HOH I:322 , HOH I:1007
BINDING SITE FOR RESIDUE 5GP I 205
04
BC8
SOFTWARE
PRO I:34 , PRO I:37 , THR I:38 , HIS I:39 , HOH I:487
BINDING SITE FOR RESIDUE EDO I 120
05
BC9
SOFTWARE
GLU I:74 , GLN I:75 , HOH I:642
BINDING SITE FOR RESIDUE EDO I 121
06
CC1
SOFTWARE
GLU I:57 , HOH I:608
BINDING SITE FOR RESIDUE EDO I 122
07
CC2
SOFTWARE
GLN I:35 , ASN I:88 , 5GP I:205 , HOH I:358 , HOH I:430 , MET J:113
BINDING SITE FOR RESIDUE EDO I 123
08
CC3
SOFTWARE
HIS A:116 , PHE J:7 , ILE J:10 , PHE J:29 , ARG J:30 , ASP J:31 , ILE J:32 , LEU J:41 , ASN J:88 , GLY J:94 , GLU J:96 , VAL J:97 , HIS J:101 , HIS J:103 , HOH J:130 , HOH J:327 , HOH J:354 , HOH J:360 , HOH J:553 , HOH J:603 , HOH J:1154
BINDING SITE FOR RESIDUE 5GP J 204
09
CC4
SOFTWARE
GLU J:4 , SER J:8 , ARG J:12 , ASN J:45 , HOH J:879
BINDING SITE FOR RESIDUE EDO J 120
10
CC5
SOFTWARE
LEU B:119 , PRO J:34 , GLN J:35 , ALA J:36 , PRO J:37 , ARG J:108 , HOH J:573 , GLU N:3
BINDING SITE FOR RESIDUE EDO J 121
11
DC4
SOFTWARE
MET J:1 , SER N:17 , ASP N:18 , ARG N:30 , 5GP N:206 , HOH N:391
BINDING SITE FOR RESIDUE EDO N 123
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: HIT_2 (I:6-115,J:6-115)
2: HIT_1 (I:88-106,J:88-106)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HIT_2
PS51084
HIT domain profile.
HINT_ECOLI
6-115
2
-
-
-
-
I:6-115
J:6-115
-
-
2
HIT_1
PS00892
HIT domain signature.
HINT_ECOLI
88-106
2
-
-
-
-
I:88-106
J:88-106
-
-
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d3n1sa_ (A:)
1b: SCOP_d3n1sb_ (B:)
1c: SCOP_d3n1se_ (E:)
1d: SCOP_d3n1sf_ (F:)
1e: SCOP_d3n1si_ (I:)
1f: SCOP_d3n1sj_ (J:)
1g: SCOP_d3n1sm_ (M:)
1h: SCOP_d3n1sn_ (N:)
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)
(
)
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)
(
)
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)
(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
HIT-like
(73)
Superfamily
:
HIT-like
(67)
Family
:
automated matches
(11)
Protein domain
:
automated matches
(11)
Escherichia coli [TaxId: 562]
(2)
1a
d3n1sa_
A:
1b
d3n1sb_
B:
1c
d3n1se_
E:
1d
d3n1sf_
F:
1e
d3n1si_
I:
1f
d3n1sj_
J:
1g
d3n1sm_
M:
1h
d3n1sn_
N:
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
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Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_HIT_3n1sN01 (N:12-110)
1b: PFAM_HIT_3n1sN02 (N:12-110)
1c: PFAM_HIT_3n1sN03 (N:12-110)
1d: PFAM_HIT_3n1sN04 (N:12-110)
1e: PFAM_HIT_3n1sN05 (N:12-110)
1f: PFAM_HIT_3n1sN06 (N:12-110)
1g: PFAM_HIT_3n1sN07 (N:12-110)
1h: PFAM_HIT_3n1sN08 (N:12-110)
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Clans
(
)
(
)
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)
(
)
Organisms
(
)
(
)
Clan
:
HIT
(23)
Family
:
HIT
(19)
Escherichia coli (strain K12)
(2)
1a
HIT-3n1sN01
N:12-110
1b
HIT-3n1sN02
N:12-110
1c
HIT-3n1sN03
N:12-110
1d
HIT-3n1sN04
N:12-110
1e
HIT-3n1sN05
N:12-110
1f
HIT-3n1sN06
N:12-110
1g
HIT-3n1sN07
N:12-110
1h
HIT-3n1sN08
N:12-110
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (189 KB)
Header - Asym.Unit
Biol.Unit 1 (50 KB)
Header - Biol.Unit 1
Biol.Unit 2 (48 KB)
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Biol.Unit 3 (49 KB)
Header - Biol.Unit 3
Biol.Unit 4 (50 KB)
Header - Biol.Unit 4
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