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3N1M
Asym. Unit
Info
Asym.Unit (122 KB)
Biol.Unit 1 (117 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF IHHN BOUND TO BOCFN3
Authors
:
J. M. Kavran, D. J. Leahy
Date
:
15 May 10 (Deposition) - 02 Jun 10 (Release) - 19 Jun 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.69
Chains
:
Asym. Unit : B,C
Biol. Unit 1: B,C (1x)
Keywords
:
Binding Sites, Cell Adhesion Molecules, Cell Cycle Proteins, Cell Line, Conserved Sequence, Fibronectins, Hedgehog Proteins, Immunoglobulin G, Membrane Glycoproteins, Membrane Proteins, Protein Binding, Tertiary, Receptors, Cell Surface, Sequence Homology, Signal Transduction, Tumor Suppressor Proteins
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. M. Kavran, M. D. Ward, O. O. Oladosu, S. Mulepati, D. J. Leahy
All Mammalian Hedgehog Proteins Interact With Cell Adhesion Molecule, Down-Regulated By Oncogenes (Cdo) And Brother Of Cdo (Boc) In A Conserved Manner.
J. Biol. Chem. V. 285 24584 2010
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Hetero Components
(2, 3)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
2a: ZINC ION (ZNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
2
Ligand/Ion
CALCIUM ION
2
ZN
1
Ligand/Ion
ZINC ION
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HOH B:12 , HIS B:145 , ASP B:152 , GLU B:181 , HIS B:187
BINDING SITE FOR RESIDUE ZN B 194
2
AC2
SOFTWARE
GLU B:94 , GLU B:95 , ASP B:100 , THR B:130 , GLU B:131
BINDING SITE FOR RESIDUE CA B 195
3
AC3
SOFTWARE
HOH B:1 , HOH B:4 , HOH B:7 , GLU B:95 , GLU B:131 , ASP B:134 , ASP B:136
BINDING SITE FOR RESIDUE CA B 196
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SAPs(SNPs)/Variants
(8, 8)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_015981 (P46L, chain B, )
2: VAR_015982 (E95K, chain B, )
3: VAR_015983 (D100E, chain B, )
4: VAR_015984 (D100N, chain B, )
5: VAR_015985 (E131K, chain B, )
6: VAR_015986 (V190A, chain B, )
7: VAR_035503 (V713M, chain C, )
8: VAR_BOC_HUMAN_CCDS2971_1_01 (V713M, chain C, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_015981
P
46
L
IHH_HUMAN
Disease (ACFD)
---
B
P
46
L
2
UniProt
VAR_015982
E
95
K
IHH_HUMAN
Disease (BDA1)
---
B
E
95
K
3
UniProt
VAR_015983
D
100
E
IHH_HUMAN
Disease (BDA1)
---
B
D
100
E
4
UniProt
VAR_015984
D
100
N
IHH_HUMAN
Disease (BDA1)
28936377
B
D
100
N
5
UniProt
VAR_015985
E
131
K
IHH_HUMAN
Disease (BDA1)
---
B
E
131
K
6
UniProt
VAR_015986
V
190
A
IHH_HUMAN
Disease (ACFD)
---
B
V
190
A
7
UniProt
VAR_035503
V
713
M
BOC_HUMAN
Unclassified
---
C
V
713
M
8
CancerSNP
VAR_BOC_HUMAN_CCDS2971_1_01
*
V
713
M
BOC_HUMAN
Disease (Breast cancer)
---
C
V
713
M
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: FN3 (-|-|C:712-812)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FN3
PS50853
Fibronectin type-III domain profile.
BOC_HUMAN
474-571
608-703
712-812
1
-
-
C:712-812
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d3n1mc_ (C:)
2a: SCOP_d3n1mb_ (B:)
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Classes
(
)
(
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Folds
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Fibronectin type III
(212)
Family
:
Fibronectin type III
(180)
Protein domain
:
automated matches
(23)
Human (Homo sapiens) [TaxId: 9606]
(23)
1a
d3n1mc_
C:
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Hedgehog/DD-peptidase
(29)
Superfamily
:
Hedgehog/DD-peptidase
(29)
Family
:
Hedgehog (development protein), N-terminal signaling domain
(23)
Protein domain
:
automated matches
(18)
Human (Homo sapiens) [TaxId: 9606]
(16)
2a
d3n1mb_
B:
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_fn3_3n1mC01 (C:716-802)
2a: PFAM_HH_signal_3n1mB01 (B:39-189)
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Clans
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Families
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Organisms
(
)
(
)
Clan
:
E-set
(290)
Family
:
fn3
(66)
Homo sapiens (Human)
(52)
1a
fn3-3n1mC01
C:716-802
Clan
:
Peptidase_MD
(20)
Family
:
HH_signal
(16)
Homo sapiens (Human)
(13)
2a
HH_signal-3n1mB01
B:39-189
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Asymmetric Unit 1
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