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3N0D
Asym. Unit
Info
Asym.Unit (57 KB)
Biol.Unit 1 (53 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF WDR5 MUTANT (W330F)
Authors
:
Y. -D. Wu, X. -H. Wu, Y. Gao, R. -C. Chen
Date
:
13 May 10 (Deposition) - 20 Oct 10 (Release) - 01 Dec 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Wdr5, Wd-Repeat Protein 5, Asp-His-Ser-Trp Tetrad, Thermostability, Circular Dichroism, Folding Energy, Guanidine Hydrochloride, Transcription
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
X. -H. Wu, R. -C. Chen, Y. Gao, Y. -D. Wu
The Effect Of Asp-His-Ser/Thr-Trp Tetrad On The Thermostability Of Wd40-Repeat Proteins
Biochemistry V. 49 10237 2010
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sites
(0, 0)
Info
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: WD_REPEATS_1 (A:102-116|A:144-158|A:186-200|A:27...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
WD_REPEATS_1
PS00678
Trp-Asp (WD) repeats signature.
WDR5_HUMAN
102-116
144-158
186-200
274-288
4
A:102-116
A:144-158
A:186-200
A:274-288
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Exons
(13, 13)
Info
All Exons
Exon 1.2b (A:20-29)
Exon 1.3 (A:30-64)
Exon 1.4 (A:64-88)
Exon 1.5 (A:89-118)
Exon 1.6 (A:119-148)
Exon 1.7 (A:149-176)
Exon 1.8 (A:177-195)
Exon 1.9 (A:195-211)
Exon 1.10 (A:211-236)
Exon 1.11 (A:236-247)
Exon 1.12 (A:248-272)
Exon 1.13 (A:273-302)
Exon 1.14a (A:302-334)
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All Exon Boundaries
01: Boundary 1.1/1.2b
02: Boundary 1.2b/1.3
03: Boundary 1.3/1.4
04: Boundary 1.4/1.5
05: Boundary 1.5/1.6
06: Boundary 1.6/1.7
07: Boundary 1.7/1.8
08: Boundary 1.8/1.9
09: Boundary 1.9/1.10
10: Boundary 1.10/1.11
11: Boundary 1.11/1.12
12: Boundary 1.12/1.13
13: Boundary 1.13/1.14a
14: Boundary 1.14a/-
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000358625
1
ENSE00001422154
chr9:
137001210-137001322
113
WDR5_HUMAN
-
0
0
-
-
1.2b
ENST00000358625
2b
ENSE00001399325
chr9:
137004942-137005080
139
WDR5_HUMAN
1-27
27
1
A:20-29
10
1.3
ENST00000358625
3
ENSE00001378987
chr9:
137005825-137005933
109
WDR5_HUMAN
28-64
37
1
A:30-64
35
1.4
ENST00000358625
4
ENSE00001370072
chr9:
137006632-137006705
74
WDR5_HUMAN
64-88
25
1
A:64-88
25
1.5
ENST00000358625
5
ENSE00001422107
chr9:
137007071-137007160
90
WDR5_HUMAN
89-118
30
1
A:89-118
30
1.6
ENST00000358625
6
ENSE00001415339
chr9:
137007455-137007544
90
WDR5_HUMAN
119-148
30
1
A:119-148
30
1.7
ENST00000358625
7
ENSE00001416091
chr9:
137007758-137007841
84
WDR5_HUMAN
149-176
28
1
A:149-176
28
1.8
ENST00000358625
8
ENSE00001401373
chr9:
137013410-137013465
56
WDR5_HUMAN
177-195
19
1
A:177-195
19
1.9
ENST00000358625
9
ENSE00001430459
chr9:
137017105-137017151
47
WDR5_HUMAN
195-211
17
1
A:195-211
17
1.10
ENST00000358625
10
ENSE00001411527
chr9:
137019588-137019663
76
WDR5_HUMAN
211-236
26
1
A:211-236
26
1.11
ENST00000358625
11
ENSE00001429531
chr9:
137020462-137020495
34
WDR5_HUMAN
236-247
12
1
A:236-247
12
1.12
ENST00000358625
12
ENSE00001431152
chr9:
137020815-137020889
75
WDR5_HUMAN
248-272
25
1
A:248-272
25
1.13
ENST00000358625
13
ENSE00001417345
chr9:
137021628-137021715
88
WDR5_HUMAN
273-302
30
1
A:273-302
30
1.14a
ENST00000358625
14a
ENSE00001833493
chr9:
137023015-137025090
2076
WDR5_HUMAN
302-334
33
1
A:302-334
33
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3n0da_ (A:)
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Class
:
All beta proteins
(24004)
Fold
:
7-bladed beta-propeller
(245)
Superfamily
:
WD40 repeat-like
(95)
Family
:
automated matches
(36)
Protein domain
:
automated matches
(36)
Human (Homo sapiens) [TaxId: 9606]
(34)
1a
d3n0da_
A:
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CATH Domains
(0, 0)
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Pfam Domains
(1, 7)
Info
all PFAM domains
1a: PFAM_WD40_3n0dA01 (A:291-331)
1b: PFAM_WD40_3n0dA02 (A:291-331)
1c: PFAM_WD40_3n0dA03 (A:291-331)
1d: PFAM_WD40_3n0dA04 (A:291-331)
1e: PFAM_WD40_3n0dA05 (A:291-331)
1f: PFAM_WD40_3n0dA06 (A:291-331)
1g: PFAM_WD40_3n0dA07 (A:291-331)
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Clan
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Beta_propeller
(192)
Family
:
WD40
(64)
Homo sapiens (Human)
(18)
1a
WD40-3n0dA01
A:291-331
1b
WD40-3n0dA02
A:291-331
1c
WD40-3n0dA03
A:291-331
1d
WD40-3n0dA04
A:291-331
1e
WD40-3n0dA05
A:291-331
1f
WD40-3n0dA06
A:291-331
1g
WD40-3n0dA07
A:291-331
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Asymmetric Unit 1
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