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3MZT
Biol. Unit 2
Info
Asym.Unit (233 KB)
Biol.Unit 1 (40 KB)
Biol.Unit 2 (41 KB)
Biol.Unit 3 (39 KB)
Biol.Unit 4 (41 KB)
Biol.Unit 5 (39 KB)
Biol.Unit 6 (41 KB)
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(1)
Title
:
PROTEIN-INDUCED PHOTOPHYSICAL CHANGES TO THE AMYLOID INDICATOR DYE, THIOFLAVIN T
Authors
:
L. S. Wolfe, M. F. Calabrese, A. Nath, D. V. Blaho, A. D. Miranker, Y. Xion
Date
:
13 May 10 (Deposition) - 08 Sep 10 (Release) - 09 May 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: F (1x)
Keywords
:
Thioflavin T, Amyloid, Parkinson'S, Alzheimer'S, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. S. Wolfe, M. F. Calabrese, A. Nath, D. V. Blaho, A. D. Miranker, Y. Xiong
Protein-Induced Photophysical Changes To The Amyloid Indicator Dye Thioflavin T.
Proc. Natl. Acad. Sci. Usa V. 107 16863 2010
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: COPPER (II) ION (CUa)
1b: COPPER (II) ION (CUb)
1c: COPPER (II) ION (CUc)
1d: COPPER (II) ION (CUd)
1e: COPPER (II) ION (CUe)
1f: COPPER (II) ION (CUf)
2a: 2-[4-(DIMETHYLAMINO)PHENYL]-3,6-DI... (TFXa)
2b: 2-[4-(DIMETHYLAMINO)PHENYL]-3,6-DI... (TFXb)
2c: 2-[4-(DIMETHYLAMINO)PHENYL]-3,6-DI... (TFXc)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CU
-1
Ligand/Ion
COPPER (II) ION
2
TFX
1
Ligand/Ion
2-[4-(DIMETHYLAMINO)PHENYL]-3,6-DIMETHYL-1,3-BENZOTHIAZOL-3-IUM
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Sites
(2, 2)
Info
All Sites
1: AC4 (SOFTWARE)
2: AC6 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC4
SOFTWARE
GLN B:8 , VAL B:9 , TYR B:10 , TYR B:26 , MET B:99 , GLN C:8 , VAL C:9 , TYR C:10 , TYR C:26 , MET C:99
BINDING SITE FOR RESIDUE TFX B 100
2
AC6
SOFTWARE
MET B:0 , ILE B:1 , HIS B:31
BINDING SITE FOR RESIDUE CU B 201
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_076691 (D76N, chain B, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_076691
D
96
N
B2MG_HUMAN
Disease (AMYL8)
398122820
B
D
76
N
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: IG_MHC (B:78-84)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IG_MHC
PS00290
Immunoglobulins and major histocompatibility complex proteins signature.
B2MG_HUMAN
98-104
1
-
B:78-84
-
-
-
-
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d3mzta_ (A:)
1b: SCOP_d3mztb_ (B:)
1c: SCOP_d3mztc_ (C:)
1d: SCOP_d3mztd_ (D:)
1e: SCOP_d3mzte_ (E:)
1f: SCOP_d3mztf_ (F:)
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Protein Domains
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Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
beta2-microglobulin
(530)
Human (Homo sapiens) [TaxId: 9606]
(350)
1a
d3mzta_
A:
1b
d3mztb_
B:
1c
d3mztc_
C:
1d
d3mztd_
D:
1e
d3mzte_
E:
1f
d3mztf_
F:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(1, 6)
Info
all PFAM domains
1a: PFAM_C1_set_3mztF01 (F:11-92)
1b: PFAM_C1_set_3mztF02 (F:11-92)
1c: PFAM_C1_set_3mztF03 (F:11-92)
1d: PFAM_C1_set_3mztF04 (F:11-92)
1e: PFAM_C1_set_3mztF05 (F:11-92)
1f: PFAM_C1_set_3mztF06 (F:11-92)
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Clan
:
Ig
(577)
Family
:
C1-set
(338)
Homo sapiens (Human)
(218)
1a
C1-set-3mztF01
F:11-92
1b
C1-set-3mztF02
F:11-92
1c
C1-set-3mztF03
F:11-92
1d
C1-set-3mztF04
F:11-92
1e
C1-set-3mztF05
F:11-92
1f
C1-set-3mztF06
F:11-92
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Chain B
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (233 KB)
Header - Asym.Unit
Biol.Unit 1 (40 KB)
Header - Biol.Unit 1
Biol.Unit 2 (41 KB)
Header - Biol.Unit 2
Biol.Unit 3 (39 KB)
Header - Biol.Unit 3
Biol.Unit 4 (41 KB)
Header - Biol.Unit 4
Biol.Unit 5 (39 KB)
Header - Biol.Unit 5
Biol.Unit 6 (41 KB)
Header - Biol.Unit 6
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