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3MZT
Asym. Unit
Info
Asym.Unit (233 KB)
Biol.Unit 1 (40 KB)
Biol.Unit 2 (41 KB)
Biol.Unit 3 (39 KB)
Biol.Unit 4 (41 KB)
Biol.Unit 5 (39 KB)
Biol.Unit 6 (41 KB)
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(1)
Title
:
PROTEIN-INDUCED PHOTOPHYSICAL CHANGES TO THE AMYLOID INDICATOR DYE, THIOFLAVIN T
Authors
:
L. S. Wolfe, M. F. Calabrese, A. Nath, D. V. Blaho, A. D. Miranker, Y. Xion
Date
:
13 May 10 (Deposition) - 08 Sep 10 (Release) - 09 May 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: F (1x)
Keywords
:
Thioflavin T, Amyloid, Parkinson'S, Alzheimer'S, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. S. Wolfe, M. F. Calabrese, A. Nath, D. V. Blaho, A. D. Miranker, Y. Xiong
Protein-Induced Photophysical Changes To The Amyloid Indicator Dye Thioflavin T.
Proc. Natl. Acad. Sci. Usa V. 107 16863 2010
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Hetero Components
(2, 9)
Info
All Hetero Components
1a: COPPER (II) ION (CUa)
1b: COPPER (II) ION (CUb)
1c: COPPER (II) ION (CUc)
1d: COPPER (II) ION (CUd)
1e: COPPER (II) ION (CUe)
1f: COPPER (II) ION (CUf)
2a: 2-[4-(DIMETHYLAMINO)PHENYL]-3,6-DI... (TFXa)
2b: 2-[4-(DIMETHYLAMINO)PHENYL]-3,6-DI... (TFXb)
2c: 2-[4-(DIMETHYLAMINO)PHENYL]-3,6-DI... (TFXc)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CU
6
Ligand/Ion
COPPER (II) ION
2
TFX
3
Ligand/Ion
2-[4-(DIMETHYLAMINO)PHENYL]-3,6-DIMETHYL-1,3-BENZOTHIAZOL-3-IUM
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
MET F:0 , ILE F:1 , HIS F:31
BINDING SITE FOR RESIDUE CU F 201
2
AC2
SOFTWARE
GLN D:8 , VAL D:9 , TYR D:10 , TYR D:26 , MET D:99 , HOH D:106 , GLN E:8 , TYR E:10 , TYR E:26 , MET E:99
BINDING SITE FOR RESIDUE TFX D 100
3
AC3
SOFTWARE
GLN A:8 , VAL A:9 , TYR A:10 , TYR A:26 , MET A:99 , GLN F:8 , VAL F:9 , TYR F:10 , TYR F:26 , MET F:99
BINDING SITE FOR RESIDUE TFX F 100
4
AC4
SOFTWARE
GLN B:8 , VAL B:9 , TYR B:10 , TYR B:26 , MET B:99 , GLN C:8 , VAL C:9 , TYR C:10 , TYR C:26 , MET C:99
BINDING SITE FOR RESIDUE TFX B 100
5
AC5
SOFTWARE
MET A:0 , ILE A:1 , HIS A:31
BINDING SITE FOR RESIDUE CU A 201
6
AC6
SOFTWARE
MET B:0 , ILE B:1 , HIS B:31
BINDING SITE FOR RESIDUE CU B 201
7
AC7
SOFTWARE
MET C:0 , ILE C:1 , HIS C:31
BINDING SITE FOR RESIDUE CU C 201
8
AC8
SOFTWARE
MET D:0 , ILE D:1 , HIS D:31
BINDING SITE FOR RESIDUE CU D 201
9
AC9
SOFTWARE
MET E:0 , ILE E:1 , HIS E:31
BINDING SITE FOR RESIDUE CU E 201
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SAPs(SNPs)/Variants
(1, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_076691 (D76N, chain A/B/C/D/E/F, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_076691
D
96
N
B2MG_HUMAN
Disease (AMYL8)
398122820
A/B/C/D/E/F
D
76
N
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 6)
Info
All PROSITE Patterns/Profiles
1: IG_MHC (A:78-84,B:78-84,C:78-84,D:78-84,E:...)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IG_MHC
PS00290
Immunoglobulins and major histocompatibility complex proteins signature.
B2MG_HUMAN
98-104
6
A:78-84
B:78-84
C:78-84
D:78-84
E:78-84
F:78-84
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d3mzta_ (A:)
1b: SCOP_d3mztb_ (B:)
1c: SCOP_d3mztc_ (C:)
1d: SCOP_d3mztd_ (D:)
1e: SCOP_d3mzte_ (E:)
1f: SCOP_d3mztf_ (F:)
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
beta2-microglobulin
(530)
Human (Homo sapiens) [TaxId: 9606]
(350)
1a
d3mzta_
A:
1b
d3mztb_
B:
1c
d3mztc_
C:
1d
d3mztd_
D:
1e
d3mzte_
E:
1f
d3mztf_
F:
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CATH Domains
(0, 0)
Info
all CATH domains
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Label:
Sorry, no Info available
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Pfam Domains
(1, 6)
Info
all PFAM domains
1a: PFAM_C1_set_3mztF01 (F:11-92)
1b: PFAM_C1_set_3mztF02 (F:11-92)
1c: PFAM_C1_set_3mztF03 (F:11-92)
1d: PFAM_C1_set_3mztF04 (F:11-92)
1e: PFAM_C1_set_3mztF05 (F:11-92)
1f: PFAM_C1_set_3mztF06 (F:11-92)
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Organisms
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(
)
Clan
:
Ig
(577)
Family
:
C1-set
(338)
Homo sapiens (Human)
(218)
1a
C1-set-3mztF01
F:11-92
1b
C1-set-3mztF02
F:11-92
1c
C1-set-3mztF03
F:11-92
1d
C1-set-3mztF04
F:11-92
1e
C1-set-3mztF05
F:11-92
1f
C1-set-3mztF06
F:11-92
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Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Show PDB file:
Asym.Unit (233 KB)
Header - Asym.Unit
Biol.Unit 1 (40 KB)
Header - Biol.Unit 1
Biol.Unit 2 (41 KB)
Header - Biol.Unit 2
Biol.Unit 3 (39 KB)
Header - Biol.Unit 3
Biol.Unit 4 (41 KB)
Header - Biol.Unit 4
Biol.Unit 5 (39 KB)
Header - Biol.Unit 5
Biol.Unit 6 (41 KB)
Header - Biol.Unit 6
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