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3MZE
Asym. Unit
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Asym.Unit (64 KB)
Biol.Unit 1 (59 KB)
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(1)
Title
:
STRUCTURE OF PENICILLIN-BINDING PROTEIN 5 FROM E.COLI: CEFOXITIN ACYL-ENZYME COMPLEX
Authors
:
G. Nicola, J. Tomberg, R. F. Pratt, R. A. Nicholas, C. Davies
Date
:
12 May 10 (Deposition) - 16 Mar 11 (Release) - 16 Mar 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Beta-Lactam Antibiotic, Penicillin-Binding Protein, Dd- Carboxypeptidase, Hydrolase, Hydrolase-Antibiotic Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
G. Nicola, J. Tomberg, R. F. Pratt, R. A. Nicholas, C. Davies
Crystal Structures Of Covalent Complexes Of Beta-Lactam Antibiotics With Escherichia Coli Penicillin-Binding Protei 5: Toward An Understanding Of Antibiotic Specificity
Biochemistry V. 49 8094 2010
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Hetero Components
(2, 5)
Info
All Hetero Components
1a: CEFOXITIN (CFXa)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CFX
1
Ligand/Ion
CEFOXITIN
2
GOL
4
Ligand/Ion
GLYCEROL
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ALA A:43 , SER A:44 , LYS A:47 , SER A:87 , ASN A:112 , THR A:214 , GLY A:215 , HIS A:216 , THR A:217 , PHE A:245 , ARG A:248
BINDING SITE FOR RESIDUE CFX A 364
2
AC2
SOFTWARE
ASN A:134 , ASN A:138 , HIS A:146 , VAL A:313 , ASN A:333 , GLN A:343
BINDING SITE FOR RESIDUE GOL A 365
3
AC3
SOFTWARE
GLU A:65 , ILE A:103 , ARG A:104 , ILE A:182
BINDING SITE FOR RESIDUE GOL A 366
4
AC4
SOFTWARE
ASP A:37 , LYS A:143 , ARG A:163
BINDING SITE FOR RESIDUE GOL A 367
5
AC5
SOFTWARE
TYR A:25 , GLN A:170 , ARG A:174 , HOH A:437
BINDING SITE FOR RESIDUE GOL A 368
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_DACA_ECOLI_001 (G105D, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_DACA_ECOLI_001
*
G
134
D
DACA_ECOLI
---
---
A
G
105
D
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d3mzea2 (A:263-355)
2a: SCOP_d3mzea1 (A:4-262)
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Protein Domains
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Class
:
All beta proteins
(24004)
Fold
:
Penicillin-binding protein associated domain
(19)
Superfamily
:
Penicillin-binding protein associated domain
(19)
Family
:
PBP5 C-terminal domain-like
(12)
Protein domain
:
Penicillin-binding protein 5, C-terminal domain
(11)
Escherichia coli [TaxId: 562]
(11)
1a
d3mzea2
A:263-355
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
beta-lactamase/transpeptidase-like
(515)
Superfamily
:
beta-lactamase/transpeptidase-like
(515)
Family
:
beta-Lactamase/D-ala carboxypeptidase
(411)
Protein domain
:
Penicillin-binding protein 5, N-terminal domain
(11)
Escherichia coli [TaxId: 562]
(11)
2a
d3mzea1
A:4-262
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_Peptidase_S11_3mzeA01 (A:6-244)
2a: PFAM_PBP5_C_3mzeA02 (A:263-354)
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Clans
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)
Organisms
(
)
(
)
Clan
:
Beta-lactamase
(210)
Family
:
Peptidase_S11
(12)
Escherichia coli (strain K12)
(6)
1a
Peptidase_S11-3mzeA01
A:6-244
Clan
:
no clan defined [family: PBP5_C]
(10)
Family
:
PBP5_C
(10)
Escherichia coli (strain K12)
(6)
2a
PBP5_C-3mzeA02
A:263-354
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Chain A
Asymmetric Unit 1
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