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3MZB
Biol. Unit 2
Info
Asym.Unit (186 KB)
Biol.Unit 1 (94 KB)
Biol.Unit 2 (90 KB)
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(1)
Title
:
X-RAY STRUCTURE OF NIKA IN COMPLEX WITH THE DOUBLY HYDROXYLATED IRON COMPLEX, 1-O2
Authors
:
C. Cavazza, C. Bochot, P. Rousselot-Pailley, P. Carpentier, M. V. Cher L. Martin, C. Marchi-Delapierre, J. C. Fontecilla-Camps, S. Menage
Date
:
12 May 10 (Deposition) - 09 Feb 11 (Release) - 09 Feb 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Protein-Bound Iron Complex, Transport Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Cavazza, C. Bochot, P. Rousselot-Pailley, P. Carpentier, M. V. Cherrier, L. Martin, C. Marchi-Delapierre, J. C. Fontecilla-Camps, S. Menage
Crystallographic Snapshots Of The Reaction Of Aromatic C-H With O(2) Catalysed By A Protein-Bound Iron Complex
Nat. Chem. V. 2 1069 2010
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Hetero Components
(4, 9)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
1e: ACETATE ION (ACTe)
1f: ACETATE ION (ACTf)
1g: ACETATE ION (ACTg)
1h: ACETATE ION (ACTh)
1i: ACETATE ION (ACTi)
1j: ACETATE ION (ACTj)
1k: ACETATE ION (ACTk)
2a: 2-[2-[CARBOXYMETHYL-[(2-HYDROXYPHE... (BHRa)
2b: 2-[2-[CARBOXYMETHYL-[(2-HYDROXYPHE... (BHRb)
3a: CHLORIDE ION (CLa)
3b: CHLORIDE ION (CLb)
3c: CHLORIDE ION (CLc)
3d: CHLORIDE ION (CLd)
3e: CHLORIDE ION (CLe)
4a: DITHIANE DIOL (DTDa)
4b: DITHIANE DIOL (DTDb)
5a: FE (III) ION (FEa)
5b: FE (III) ION (FEb)
6a: GLYCEROL (GOLa)
6b: GLYCEROL (GOLb)
6c: GLYCEROL (GOLc)
6d: GLYCEROL (GOLd)
6e: GLYCEROL (GOLe)
6f: GLYCEROL (GOLf)
6g: GLYCEROL (GOLg)
6h: GLYCEROL (GOLh)
6i: GLYCEROL (GOLi)
6j: GLYCEROL (GOLj)
6k: GLYCEROL (GOLk)
6l: GLYCEROL (GOLl)
6m: GLYCEROL (GOLm)
7a: SULFATE ION (SO4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
4
Ligand/Ion
ACETATE ION
2
BHR
1
Ligand/Ion
2-[2-[CARBOXYMETHYL-[(2-HYDROXYPHENYL)METHYL]AMINO]ETHYL-[(2,3-DIHYDROXYPHENYL)METHYL]AMINO]ETHANOIC ACID
3
CL
-1
Ligand/Ion
CHLORIDE ION
4
DTD
1
Ligand/Ion
DITHIANE DIOL
5
FE
-1
Ligand/Ion
FE (III) ION
6
GOL
3
Ligand/Ion
GLYCEROL
7
SO4
-1
Ligand/Ion
SULFATE ION
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Sites
(16, 16)
Info
All Sites
01: AC3 (SOFTWARE)
02: AC8 (SOFTWARE)
03: AC9 (SOFTWARE)
04: BC9 (SOFTWARE)
05: CC7 (SOFTWARE)
06: CC8 (SOFTWARE)
07: CC9 (SOFTWARE)
08: DC1 (SOFTWARE)
09: DC2 (SOFTWARE)
10: DC3 (SOFTWARE)
11: DC4 (SOFTWARE)
12: DC5 (SOFTWARE)
13: DC6 (SOFTWARE)
14: DC7 (SOFTWARE)
15: DC8 (SOFTWARE)
16: DC9 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC3
SOFTWARE
ASN A:302 , GLY A:304 , PHE B:229 , ALA B:230 , SER B:233 , THR B:286
BINDING SITE FOR RESIDUE ACT A 504
02
AC8
SOFTWARE
ARG A:384 , ARG A:389 , HOH A:811 , LEU B:430 , ARG B:457
BINDING SITE FOR RESIDUE SO4 A 509
03
AC9
SOFTWARE
ALA A:158 , LEU A:167 , GLN A:168 , HOH A:599 , THR B:211 , ASP B:213
BINDING SITE FOR RESIDUE GOL A 510
04
BC9
SOFTWARE
ARG A:97 , LYS B:314
BINDING SITE FOR RESIDUE CL A 519
05
CC7
SOFTWARE
PHE A:229 , ALA A:230 , LEU A:242 , THR A:286 , ASN B:302
BINDING SITE FOR RESIDUE GOL A 527
06
CC8
SOFTWARE
GLN B:385 , HIS B:395 , ARG B:396 , HOH B:647 , HOH B:851
BINDING SITE FOR RESIDUE ACT B 502
07
CC9
SOFTWARE
ASN A:75 , GLY A:76 , THR B:203 , PRO B:225 , ASP B:227 , THR B:228
BINDING SITE FOR RESIDUE ACT B 503
08
DC1
SOFTWARE
SER B:243 , ILE B:246 , TYR B:485 , HOH B:700
BINDING SITE FOR RESIDUE GOL B 504
09
DC2
SOFTWARE
TRP B:10 , MET B:27 , PHE B:28 , HOH B:640
BINDING SITE FOR RESIDUE CL B 505
10
DC3
SOFTWARE
TYR B:22 , THR B:23 , MET B:27 , TRP B:100 , ARG B:137 , TRP B:398 , THR B:490 , FE B:507 , HOH B:521
BINDING SITE FOR RESIDUE BHR B 506
11
DC4
SOFTWARE
BHR B:506
BINDING SITE FOR RESIDUE FE B 507
12
DC5
SOFTWARE
TRP B:10 , PRO B:11 , ARG B:205 , GLY B:219 , ASN B:220 , HOH B:793
BINDING SITE FOR RESIDUE DTD B 508
13
DC6
SOFTWARE
SER B:31 , ILE B:492 , PRO B:493 , GLU B:495 , HOH B:572 , HOH B:741
BINDING SITE FOR RESIDUE GOL B 509
14
DC7
SOFTWARE
LEU B:167 , GLN B:168
BINDING SITE FOR RESIDUE GOL B 510
15
DC8
SOFTWARE
ARG B:89 , ASP B:109 , VAL B:110
BINDING SITE FOR RESIDUE ACT B 511
16
DC9
SOFTWARE
GLU B:434 , GLN B:446 , LEU B:450 , ASP B:453
BINDING SITE FOR RESIDUE ACT B 512
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: SBP_BACTERIAL_5 (B:51-73)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SBP_BACTERIAL_5
PS01040
Bacterial extracellular solute-binding proteins, family 5 signature.
NIKA_ECOLI
73-95
1
-
B:51-73
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3mzba_ (A:)
1b: SCOP_d3mzbb_ (B:)
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Classes
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Periplasmic binding protein-like II
(813)
Superfamily
:
Periplasmic binding protein-like II
(813)
Family
:
Phosphate binding protein-like
(463)
Protein domain
:
Nickel-binding periplasmic protein NikA
(18)
Escherichia coli [TaxId: 562]
(18)
1a
d3mzba_
A:
1b
d3mzbb_
B:
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
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Sorry, no Info available
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Atom Selection
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Protein
Nucleic
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Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain B
Asymmetric Unit 1
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select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
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Show PDB file:
Asym.Unit (186 KB)
Header - Asym.Unit
Biol.Unit 1 (94 KB)
Header - Biol.Unit 1
Biol.Unit 2 (90 KB)
Header - Biol.Unit 2
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