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Asym. Unit
Info
Asym.Unit (109 KB)
Biol.Unit 1 (103 KB)
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(1)
Title
:
CRYSTAL STRUCTURE SONIC HEDGEHOG BOUND TO THE 5E1 FAB FRAGMENT
Authors
:
S. G. Hymowitz, H. R. Maun
Date
:
07 May 10 (Deposition) - 26 May 10 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.83
Chains
:
Asym. Unit : A,H,L
Biol. Unit 1: A,H,L (1x)
Keywords
:
Antibody Complex, Fab Fragment, Metalloprotease, Calcium Binding, Zinc Hydrolase, Development, Morphogen, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. R. Maun, X. Wen, A. Lingel, F. J. De Sauvage, R. A. Lazarus, S. J. Scales, S. G. Hymowitz
Hedgehog Pathway Antagonist 5E1 Binds Hedgehog At The Pseudo-Active Site.
J. Biol. Chem. V. 285 26570 2010
[
close entry info
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Hetero Components
(3, 6)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
3a: ZINC ION (ZNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
2
Ligand/Ion
CALCIUM ION
2
SO4
3
Ligand/Ion
SULFATE ION
3
ZN
1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SO4 A:3 , HIS A:140 , ASP A:147 , GLU A:176 , HIS A:182 , HOH A:334
BINDING SITE FOR RESIDUE ZN A 400
2
AC2
SOFTWARE
GLU A:89 , GLU A:90 , ASP A:95 , THR A:125 , GLU A:126
BINDING SITE FOR RESIDUE CA A 401
3
AC3
SOFTWARE
GLU A:90 , GLU A:126 , ASP A:129 , ASP A:131 , HOH A:373
BINDING SITE FOR RESIDUE CA A 402
4
AC4
SOFTWARE
ARG A:101 , LYS A:105
BINDING SITE FOR RESIDUE SO4 A 1
5
AC5
SOFTWARE
HOH A:7 , HIS A:134 , SER A:135 , SER A:138 , HIS A:140 , GLU A:176 , HIS A:182 , HOH A:334 , ZN A:400 , HOH A:436
BINDING SITE FOR RESIDUE SO4 A 3
6
AC6
SOFTWARE
LYS L:39 , GLN L:42 , LYS L:45 , HOH L:256 , HOH L:446
BINDING SITE FOR RESIDUE SO4 L 215
[
close Site info
]
SAPs(SNPs)/Variants
(33, 33)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_062594 (L39P, chain A, )
02: VAR_062595 (E53K, chain A, )
03: VAR_062596 (D83V, chain A, )
04: VAR_062597 (I84F, chain A, )
05: VAR_009163 (D88V, chain A, )
06: VAR_009164 (Q100H, chain A, )
07: VAR_062598 (C102R, chain A, )
08: VAR_062599 (C102Y, chain A, )
09: VAR_062600 (L109F, chain A, )
10: VAR_023806 (A110D, chain A, )
11: VAR_062601 (A110T, chain A, )
12: VAR_017883 (I111F, chain A, )
13: VAR_039889 (I111N, chain A, )
14: VAR_009165 (N115K, chain A, )
15: VAR_003620 (W117G, chain A, )
16: VAR_003621 (W117R, chain A, )
17: VAR_062602 (V124M, chain A, )
18: VAR_062603 (E136K, chain A, )
19: VAR_039890 (H140P, chain A, )
20: VAR_039891 (H140Q, chain A, )
21: VAR_062604 (G143D, chain A, )
22: VAR_062605 (R144P, chain A, )
23: VAR_062606 (D147N, chain A, )
24: VAR_062607 (T150K, chain A, )
25: VAR_023807 (T150R, chain A, )
26: VAR_062608 (S156R, chain A, )
27: VAR_062609 (F170C, chain A, )
28: VAR_062610 (D171H, chain A, )
29: VAR_039892 (C183F, chain A, )
30: VAR_062611 (C183R, chain A, )
31: VAR_062612 (C183Y, chain A, )
32: VAR_062613 (S184L, chain A, )
33: VAR_009166 (E188Q, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_062594
L
39
P
SHH_HUMAN
Disease (HPE3)
---
A
L
39
P
02
UniProt
VAR_062595
E
53
K
SHH_HUMAN
Disease (HPE3)
---
A
E
53
K
03
UniProt
VAR_062596
D
83
V
SHH_HUMAN
Disease (HPE3)
---
A
D
83
V
04
UniProt
VAR_062597
I
84
F
SHH_HUMAN
Disease (HPE3)
---
A
I
84
F
05
UniProt
VAR_009163
D
88
V
SHH_HUMAN
Disease (HPE3)
---
A
D
88
V
06
UniProt
VAR_009164
Q
100
H
SHH_HUMAN
Disease (HPE3)
---
A
Q
100
H
07
UniProt
VAR_062598
C
102
R
SHH_HUMAN
Disease (HPE3)
---
A
C
102
R
08
UniProt
VAR_062599
C
102
Y
SHH_HUMAN
Disease (HPE3)
---
A
C
102
Y
09
UniProt
VAR_062600
L
109
F
SHH_HUMAN
Disease (HPE3)
---
A
L
109
F
10
UniProt
VAR_023806
A
110
D
SHH_HUMAN
Disease (HPE3)
---
A
A
110
D
11
UniProt
VAR_062601
A
110
T
SHH_HUMAN
Disease (HPE3)
---
A
A
110
T
12
UniProt
VAR_017883
I
111
F
SHH_HUMAN
Disease (SMMCI)
---
A
I
111
F
13
UniProt
VAR_039889
I
111
N
SHH_HUMAN
Disease (HPE3)
---
A
I
111
N
14
UniProt
VAR_009165
N
115
K
SHH_HUMAN
Disease (HPE3)
---
A
N
115
K
15
UniProt
VAR_003620
W
117
G
SHH_HUMAN
Disease (HPE3)
---
A
W
117
G
16
UniProt
VAR_003621
W
117
R
SHH_HUMAN
Disease (HPE3)
---
A
W
117
R
17
UniProt
VAR_062602
V
124
M
SHH_HUMAN
Disease (HPE3)
---
A
V
124
M
18
UniProt
VAR_062603
E
136
K
SHH_HUMAN
Disease (HPE3)
---
A
E
136
K
19
UniProt
VAR_039890
H
140
P
SHH_HUMAN
Disease (HPE3)
---
A
H
140
P
20
UniProt
VAR_039891
H
140
Q
SHH_HUMAN
Disease (HPE3)
---
A
H
140
Q
21
UniProt
VAR_062604
G
143
D
SHH_HUMAN
Disease (HPE3)
---
A
G
143
D
22
UniProt
VAR_062605
R
144
P
SHH_HUMAN
Disease (HPE3)
---
A
R
144
P
23
UniProt
VAR_062606
D
147
N
SHH_HUMAN
Disease (HPE3)
---
A
D
147
N
24
UniProt
VAR_062607
T
150
K
SHH_HUMAN
Disease (HPE3)
---
A
T
150
K
25
UniProt
VAR_023807
T
150
R
SHH_HUMAN
Disease (HPE3)
---
A
T
150
R
26
UniProt
VAR_062608
S
156
R
SHH_HUMAN
Disease (HPE3)
---
A
S
156
R
27
UniProt
VAR_062609
F
170
C
SHH_HUMAN
Disease (HPE3)
---
A
F
170
C
28
UniProt
VAR_062610
D
171
H
SHH_HUMAN
Disease (HPE3)
---
A
D
171
H
29
UniProt
VAR_039892
C
183
F
SHH_HUMAN
Disease (HPE3)
---
A
C
183
F
30
UniProt
VAR_062611
C
183
R
SHH_HUMAN
Disease (HPE3)
---
A
C
183
R
31
UniProt
VAR_062612
C
183
Y
SHH_HUMAN
Disease (HPE3)
---
A
C
183
Y
32
UniProt
VAR_062613
S
184
L
SHH_HUMAN
Disease (HPE3)
---
A
S
184
L
33
UniProt
VAR_009166
E
188
Q
SHH_HUMAN
Disease (HPE3)
---
A
E
188
Q
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 3)
Info
All SCOP Domains
1a: SCOP_d3mxwl1 (L:1-107)
2a: SCOP_d3mxwl2 (L:108-212)
3a: SCOP_d3mxwa_ (A:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
automated matches
(864)
Protein domain
:
automated matches
(864)
Human (Homo sapiens) [TaxId: 9606]
(448)
1a
d3mxwl1
L:1-107
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
automated matches
(652)
Human (Homo sapiens) [TaxId: 9606]
(334)
2a
d3mxwl2
L:108-212
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Hedgehog/DD-peptidase
(29)
Superfamily
:
Hedgehog/DD-peptidase
(29)
Family
:
Hedgehog (development protein), N-terminal signaling domain
(23)
Protein domain
:
automated matches
(18)
Human (Homo sapiens) [TaxId: 9606]
(16)
3a
d3mxwa_
A:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_Hint_3mxwA01 (A:187-191)
2a: PFAM_HH_signal_3mxwA02 (A:39-184)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
H-int
(15)
Family
:
Hint
(8)
Homo sapiens (Human)
(7)
1a
Hint-3mxwA01
A:187-191
Clan
:
Peptidase_MD
(20)
Family
:
HH_signal
(16)
Homo sapiens (Human)
(13)
2a
HH_signal-3mxwA02
A:39-184
[
close Pfam info
]
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)
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Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
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Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain H
Chain L
Asymmetric Unit 1
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