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Getting 'Biological Unit' information from database.
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Getting 'Hetero Component' information from database.
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Getting 'Exon' information from database.
3MVS
Asym. Unit
Info
Asym.Unit (88 KB)
Biol.Unit 1 (83 KB)
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(1)
Title
:
STRUCTURE OF THE N-TERMINUS OF CADHERIN 23
Authors
:
P. Clark, J. S. Joseph, A. R. Kolatkar
Date
:
04 May 10 (Deposition) - 09 Jun 10 (Release) - 23 Jun 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.10
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Cadherin, Adhesion, Extracellular Domain, Cell Adhesion
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. M. Elledge, P. Kazmierczak, P. Clark, J. S. Joseph, A. Kolatkar, P. Kuhn, U. Muller
Structure Of The N Terminus Of Cadherin 23 Reveals A New Adhesion Mechanism For A Subset Of Cadherin Superfamily Members.
Proc. Natl. Acad. Sci. Usa V. 107 10708 2010
[
close entry info
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Hetero Components
(2, 28)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
2k: 1,2-ETHANEDIOL (EDOk)
2l: 1,2-ETHANEDIOL (EDOl)
2m: 1,2-ETHANEDIOL (EDOm)
2n: 1,2-ETHANEDIOL (EDOn)
2o: 1,2-ETHANEDIOL (EDOo)
2p: 1,2-ETHANEDIOL (EDOp)
2q: 1,2-ETHANEDIOL (EDOq)
2r: 1,2-ETHANEDIOL (EDOr)
2s: 1,2-ETHANEDIOL (EDOs)
2t: 1,2-ETHANEDIOL (EDOt)
2u: 1,2-ETHANEDIOL (EDOu)
2v: 1,2-ETHANEDIOL (EDOv)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
6
Ligand/Ion
CALCIUM ION
2
EDO
22
Ligand/Ion
1,2-ETHANEDIOL
[
close Hetero Component info
]
Sites
(28, 28)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:21 , ASP A:71 , GLU A:73 , ASP A:104 , HOH A:335 , HOH A:395
BINDING SITE FOR RESIDUE CA A 211
02
AC2
SOFTWARE
GLU A:21 , GLU A:73 , ASP A:101 , VAL A:102 , ASP A:104 , ASP A:137
BINDING SITE FOR RESIDUE CA A 212
03
AC3
SOFTWARE
ASN A:103 , ASN A:105 , ASP A:135 , ASP A:137 , GLY A:141 , ASP A:186
BINDING SITE FOR RESIDUE CA A 213
04
AC4
SOFTWARE
GLU A:120 , GLU A:173 , ASP A:205 , MET A:206 , ASP A:208 , HOH A:486
BINDING SITE FOR RESIDUE CA A 214
05
AC5
SOFTWARE
GLU A:120 , ASP A:171 , GLU A:173 , ASP A:208 , HOH A:338 , HOH A:485
BINDING SITE FOR RESIDUE CA A 215
06
AC6
SOFTWARE
ASN A:3 , ARG A:4 , ASP A:36 , ASP A:38 , ASP A:40 , ASP A:86
BINDING SITE FOR RESIDUE CA A 216
07
AC7
SOFTWARE
ASN A:3 , ASP A:38 , ASP A:40 , GLN A:88
BINDING SITE FOR RESIDUE EDO A 217
08
AC8
SOFTWARE
ASN A:39
BINDING SITE FOR RESIDUE EDO A 218
09
AC9
SOFTWARE
LYS A:75 , SER A:76 , GLU A:77 , ASN A:198 , HOH A:277 , HOH A:366
BINDING SITE FOR RESIDUE EDO A 219
10
BC1
SOFTWARE
PRO A:127
BINDING SITE FOR RESIDUE EDO A 220
11
BC2
SOFTWARE
THR A:9 , ASN A:10 , ASP A:14
BINDING SITE FOR RESIDUE EDO A 221
12
BC3
SOFTWARE
GLU A:21 , ASP A:22 , THR A:23 , PRO A:69 , HOH A:375
BINDING SITE FOR RESIDUE EDO A 222
13
BC4
SOFTWARE
GLU A:58 , HOH A:274 , HOH A:510
BINDING SITE FOR RESIDUE EDO A 223
14
BC5
SOFTWARE
ASN A:111 , ILE A:130 , HOH A:380
BINDING SITE FOR RESIDUE EDO A 224
15
BC6
SOFTWARE
VAL A:131 , ASN A:132 , TYR A:146 , ARG A:161 , GLU A:173 , HOH A:441
BINDING SITE FOR RESIDUE EDO A 225
16
BC7
SOFTWARE
PHE A:12 , THR A:30
BINDING SITE FOR RESIDUE EDO A 226
17
BC8
SOFTWARE
ASN A:3 , HOH A:279
BINDING SITE FOR RESIDUE EDO A 227
18
BC9
SOFTWARE
PHE A:8 , ILE A:91 , ARG A:93 , HOH A:438
BINDING SITE FOR RESIDUE EDO A 228
19
CC1
SOFTWARE
VAL A:57 , GLN A:168 , HOH A:275 , HOH A:334
BINDING SITE FOR RESIDUE EDO A 229
20
CC2
SOFTWARE
ALA A:106 , PRO A:107 , THR A:108 , HOH A:342
BINDING SITE FOR RESIDUE EDO A 230
21
CC3
SOFTWARE
ASN A:111 , HOH A:431
BINDING SITE FOR RESIDUE EDO A 231
22
CC4
SOFTWARE
LEU A:138 , GLY A:139 , EDO A:235 , HOH A:378
BINDING SITE FOR RESIDUE EDO A 232
23
CC5
SOFTWARE
VAL A:46 , SER A:47 , GLY A:48 , GLU A:49 , PRO A:123 , VAL A:124 , GLU A:169 , HOH A:497
BINDING SITE FOR RESIDUE EDO A 233
24
CC6
SOFTWARE
ARG A:4 , MET A:37 , HOH A:483
BINDING SITE FOR RESIDUE EDO A 234
25
CC7
SOFTWARE
ASP A:135 , PRO A:136 , ASP A:137 , GLY A:142 , VAL A:174 , THR A:175 , EDO A:232 , EDO A:238 , HOH A:299 , HOH A:319
BINDING SITE FOR RESIDUE EDO A 235
26
CC8
SOFTWARE
ASP A:205 , MET A:206 , GLN A:207 , EDO A:237
BINDING SITE FOR RESIDUE EDO A 236
27
CC9
SOFTWARE
ASP A:205 , EDO A:236
BINDING SITE FOR RESIDUE EDO A 237
28
DC1
SOFTWARE
THR A:134 , ASP A:135 , PRO A:136 , VAL A:174 , GLN A:176 , EDO A:235 , HOH A:387 , HOH A:400
BINDING SITE FOR RESIDUE EDO A 238
[
close Site info
]
SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_CAD23_MOUSE_002 (M206V, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_CAD23_MOUSE_002
*
M
229
V
CAD23_MOUSE
---
---
A
M
206
V
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 3)
Info
All PROSITE Patterns/Profiles
1: CADHERIN_2 (A:19-109|A:110-210|-|-|-|-|-|-|-|-...)
2: CADHERIN_1 (A:97-107|-|-|-|-|-|-|-|-|-|-|-|-|-...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CADHERIN_2
PS50268
Cadherins domain profile.
CAD23_MOUSE
42-132
133-236
237-348
349-460
461-561
562-671
672-784
779-890
891-995
996-1102
1103-1208
1210-1313
1314-1418
1420-1527
1529-1634
1635-1744
1759-1851
1852-1959
1960-2069
2070-2174
2175-2293
2297-2402
2403-2509
2510-2611
2614-2722
2729-2846
2847-2975
2
A:19-109
A:110-210
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
2
CADHERIN_1
PS00232
Cadherin domain signature.
CAD23_MOUSE
120-130
336-346
549-559
659-669
766-776
878-888
1090-1100
1406-1416
1515-1525
1622-1632
1732-1742
1839-1849
1947-1957
2057-2067
2281-2291
2390-2400
2599-2609
1
A:97-107
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
[
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]
Exons
(0, 0)
Info
All Exons
View:
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Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Cadherin_3mvsA01 (A:114-204)
1b: PFAM_Cadherin_3mvsA02 (A:114-204)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
E-set
(290)
Family
:
Cadherin
(41)
Mus musculus (Mouse)
(26)
1a
Cadherin-3mvsA01
A:114-204
1b
Cadherin-3mvsA02
A:114-204
[
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]
Atom Selection
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Protein
Nucleic
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Sidechain
Hetero
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Solvent
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Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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