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3MVO
Asym. Unit
Info
Asym.Unit (485 KB)
Biol.Unit 1 (476 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF BOVINE GLUTAMATE DEHYDROGENASE COMPLEXED WITH EU3+
Authors
:
T. J. Smith, M. Li
Date
:
04 May 10 (Deposition) - 04 May 11 (Release) - 31 Aug 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.23
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Gdh, Eu3+, Glutamate Dehydrogenase, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Bailey, L. Powell, L. Sinanan, J. Neal, M. Li, T. Smith, E. Bell
A Novel Mechanism Of V-Type Zinc Inhibition Of Glutamate Dehydrogenase Results From Disruption Of Subunit Interactions Necessary For Efficient Catalysis.
Febs J. V. 278 3140 2011
[
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Hetero Components
(3, 14)
Info
All Hetero Components
1a: EUROPIUM (III) ION (EU3a)
1b: EUROPIUM (III) ION (EU3b)
2a: GLUTAMIC ACID (GLUa)
2b: GLUTAMIC ACID (GLUb)
2c: GLUTAMIC ACID (GLUc)
2d: GLUTAMIC ACID (GLUd)
2e: GLUTAMIC ACID (GLUe)
2f: GLUTAMIC ACID (GLUf)
3a: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPa)
3b: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPb)
3c: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPc)
3d: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPd)
3e: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPe)
3f: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EU3
2
Ligand/Ion
EUROPIUM (III) ION
2
GLU
6
Mod. Amino Acid
GLUTAMIC ACID
3
NDP
6
Ligand/Ion
NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
[
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:90 , GLY A:91 , MET A:111 , LYS A:114 , LYS A:126 , ALA A:166 , PRO A:167 , ASP A:168 , ARG A:211 , GLY A:377 , VAL A:378 , SER A:381 , NDP A:552
BINDING SITE FOR RESIDUE GLU A 502
02
AC2
SOFTWARE
LYS B:90 , GLY B:91 , GLY B:92 , MET B:111 , LYS B:114 , LYS B:126 , ALA B:166 , PRO B:167 , ASP B:168 , ARG B:211 , ASN B:349 , GLY B:377 , VAL B:378 , SER B:381 , NDP B:552
BINDING SITE FOR RESIDUE GLU B 502
03
AC3
SOFTWARE
GLY C:92 , MET C:111 , LYS C:114 , LYS C:126 , PRO C:167 , ARG C:211 , THR C:215 , GLY C:377 , NDP C:552
BINDING SITE FOR RESIDUE GLU C 502
04
AC4
SOFTWARE
LYS D:90 , GLY D:91 , GLY D:92 , MET D:111 , LYS D:114 , LYS D:126 , ALA D:166 , PRO D:167 , ASP D:168 , THR D:199 , ARG D:211 , VAL D:378 , SER D:381 , NDP D:552
BINDING SITE FOR RESIDUE GLU D 502
05
AC5
SOFTWARE
LYS E:90 , MET E:111 , LYS E:114 , LYS E:126 , ALA E:166 , PRO E:167 , ASP E:168 , THR E:199 , ARG E:211 , GLY E:377 , VAL E:378 , SER E:381 , NDP E:552
BINDING SITE FOR RESIDUE GLU E 502
06
AC6
SOFTWARE
LYS F:90 , GLY F:92 , MET F:111 , LYS F:114 , LYS F:126 , ALA F:166 , PRO F:167 , ASP F:168 , THR F:199 , ARG F:211 , ASN F:349 , GLY F:377 , VAL F:378 , SER F:381 , NDP F:552
BINDING SITE FOR RESIDUE GLU F 502
07
AC7
SOFTWARE
ARG A:94 , ASP A:168 , MET A:169 , SER A:170 , ARG A:211 , THR A:215 , GLY A:251 , PHE A:252 , GLY A:253 , ASN A:254 , VAL A:255 , GLU A:275 , SER A:276 , LYS A:295 , ALA A:326 , GLN A:330 , ALA A:348 , ASN A:349 , ASN A:374 , GLU A:502
BINDING SITE FOR RESIDUE NDP A 552
08
AC8
SOFTWARE
ARG B:94 , ASP B:168 , MET B:169 , SER B:170 , ARG B:211 , THR B:215 , GLN B:250 , GLY B:251 , PHE B:252 , GLY B:253 , ASN B:254 , VAL B:255 , GLU B:275 , SER B:276 , LYS B:295 , ALA B:326 , GLN B:330 , ALA B:348 , ASN B:349 , ASN B:374 , GLU B:502
BINDING SITE FOR RESIDUE NDP B 552
09
AC9
SOFTWARE
ARG F:94 , ASP F:168 , MET F:169 , SER F:170 , ARG F:211 , THR F:215 , GLN F:250 , PHE F:252 , GLY F:253 , ASN F:254 , VAL F:255 , GLU F:275 , SER F:276 , LYS F:295 , ALA F:325 , ALA F:326 , ALA F:348 , ASN F:349 , ASN F:374 , GLU F:502
BINDING SITE FOR RESIDUE NDP F 552
10
BC1
SOFTWARE
ARG D:94 , PRO D:167 , ASP D:168 , MET D:169 , SER D:170 , ARG D:211 , THR D:215 , GLN D:250 , GLY D:251 , PHE D:252 , GLY D:253 , ASN D:254 , VAL D:255 , GLU D:275 , SER D:276 , LYS D:295 , ALA D:326 , GLN D:330 , ALA D:348 , ASN D:349 , ASN D:374 , GLU D:502
BINDING SITE FOR RESIDUE NDP D 552
11
BC2
SOFTWARE
ARG E:94 , MET E:169 , SER E:170 , ARG E:211 , GLN E:250 , GLY E:251 , PHE E:252 , GLY E:253 , ASN E:254 , VAL E:255 , GLU E:275 , SER E:276 , LYS E:295 , ALA E:326 , ALA E:348 , ASN E:349 , ASN E:374 , GLU E:502
BINDING SITE FOR RESIDUE NDP E 552
12
BC3
SOFTWARE
ARG C:94 , ASP C:168 , MET C:169 , SER C:170 , THR C:215 , GLN C:250 , GLY C:251 , PHE C:252 , GLY C:253 , ASN C:254 , VAL C:255 , GLU C:275 , SER C:276 , LYS C:295 , ALA C:326 , ALA C:348 , ASN C:349 , GLU C:502
BINDING SITE FOR RESIDUE NDP C 552
13
BC4
SOFTWARE
GLU D:402 , GLU E:402 , GLU F:402
BINDING SITE FOR RESIDUE EU3 D 503
14
BC5
SOFTWARE
GLU A:402 , ASN A:406 , PHE A:436 , ILE A:440 , GLU B:402 , GLU C:402
BINDING SITE FOR RESIDUE EU3 A 503
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 6)
Info
All PROSITE Patterns/Profiles
1: GLFV_DEHYDROGENASE (A:120-133,B:120-133,C:120-133,D:12...)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GLFV_DEHYDROGENASE
PS00074
Glu / Leu / Phe / Val dehydrogenases active site.
DHE3_BOVIN
177-190
6
A:120-133
B:120-133
C:120-133
D:120-133
E:120-133
F:120-133
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Exons
(0, 0)
Info
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
(2, 12)
Info
all PFAM domains
1a: PFAM_ELFV_dehydrog_3mvoF01 (F:206-420)
1b: PFAM_ELFV_dehydrog_3mvoF02 (F:206-420)
1c: PFAM_ELFV_dehydrog_3mvoF03 (F:206-420)
1d: PFAM_ELFV_dehydrog_3mvoF04 (F:206-420)
1e: PFAM_ELFV_dehydrog_3mvoF05 (F:206-420)
1f: PFAM_ELFV_dehydrog_3mvoF06 (F:206-420)
2a: PFAM_ELFV_dehydrog_N_3mvoF07 (F:55-187)
2b: PFAM_ELFV_dehydrog_N_3mvoF08 (F:55-187)
2c: PFAM_ELFV_dehydrog_N_3mvoF09 (F:55-187)
2d: PFAM_ELFV_dehydrog_N_3mvoF10 (F:55-187)
2e: PFAM_ELFV_dehydrog_N_3mvoF11 (F:55-187)
2f: PFAM_ELFV_dehydrog_N_3mvoF12 (F:55-187)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
NADP_Rossmann
(1239)
Family
:
ELFV_dehydrog
(13)
Bos taurus (Bovine)
(5)
1a
ELFV_dehydrog-3mvoF01
F:206-420
1b
ELFV_dehydrog-3mvoF02
F:206-420
1c
ELFV_dehydrog-3mvoF03
F:206-420
1d
ELFV_dehydrog-3mvoF04
F:206-420
1e
ELFV_dehydrog-3mvoF05
F:206-420
1f
ELFV_dehydrog-3mvoF06
F:206-420
Clan
:
no clan defined [family: ELFV_dehydrog_N]
(13)
Family
:
ELFV_dehydrog_N
(13)
Bos taurus (Bovine)
(5)
2a
ELFV_dehydrog_N-3mvoF07
F:55-187
2b
ELFV_dehydrog_N-3mvoF08
F:55-187
2c
ELFV_dehydrog_N-3mvoF09
F:55-187
2d
ELFV_dehydrog_N-3mvoF10
F:55-187
2e
ELFV_dehydrog_N-3mvoF11
F:55-187
2f
ELFV_dehydrog_N-3mvoF12
F:55-187
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