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3MTU
Asym. Unit
Info
Asym.Unit (159 KB)
Biol.Unit 1 (150 KB)
Biol.Unit 2 (126 KB)
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(1)
Title
:
STRUCTURE OF THE TROPOMYOSIN OVERLAP COMPLEX FROM CHICKEN SMOOTH MUSCLE
Authors
:
V. Aklenchin, J. Frye, I. Rayment
Date
:
30 Apr 10 (Deposition) - 23 Jun 10 (Release) - 31 May 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Biol. Unit 2: A,B,C,D,F (1x)
Keywords
:
Tropomysoin, Overlap Complex, Coiled-Coils, Contractile Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Frye, V. A. Klenchin, I. Rayment
Structure Of The Tropomyosin Overlap Complex From Chicken Smooth Muscle: Insight Into The Diversity Of N-Terminal Recognition .
Biochemistry V. 49 4908 2010
[
close entry info
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Hetero Components
(4, 36)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
3a: ETHANOL (EOHa)
3b: ETHANOL (EOHb)
3c: ETHANOL (EOHc)
3d: ETHANOL (EOHd)
3e: ETHANOL (EOHe)
3f: ETHANOL (EOHf)
3g: ETHANOL (EOHg)
4a: SELENOMETHIONINE (MSEa)
4b: SELENOMETHIONINE (MSEb)
4c: SELENOMETHIONINE (MSEc)
4d: SELENOMETHIONINE (MSEd)
4e: SELENOMETHIONINE (MSEe)
4f: SELENOMETHIONINE (MSEf)
4g: SELENOMETHIONINE (MSEg)
4h: SELENOMETHIONINE (MSEh)
4i: SELENOMETHIONINE (MSEi)
4j: SELENOMETHIONINE (MSEj)
4k: SELENOMETHIONINE (MSEk)
4l: SELENOMETHIONINE (MSEl)
4m: SELENOMETHIONINE (MSEm)
4n: SELENOMETHIONINE (MSEn)
4o: SELENOMETHIONINE (MSEo)
4p: SELENOMETHIONINE (MSEp)
4q: SELENOMETHIONINE (MSEq)
4r: SELENOMETHIONINE (MSEr)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
2
Ligand/Ion
CHLORIDE ION
2
EDO
9
Ligand/Ion
1,2-ETHANEDIOL
3
EOH
7
Ligand/Ion
ETHANOL
4
MSE
18
Mod. Amino Acid
SELENOMETHIONINE
[
close Hetero Component info
]
Sites
(17, 17)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY B:-2 , MSE B:1 , HOH B:140 , HOH F:179
BINDING SITE FOR RESIDUE CL B 258
02
AC2
SOFTWARE
ILE A:255 , LYS C:12 , LYS D:7
BINDING SITE FOR RESIDUE CL A 258
03
AC3
SOFTWARE
ALA A:-1 , HOH A:156 , HOH A:270 , GLN B:229 , HOH B:283 , GLU C:232 , GLY C:233 , HOH C:313
BINDING SITE FOR RESIDUE EDO A 259
04
AC4
SOFTWARE
SER A:0 , HOH B:36 , ASN B:223 , LEU B:226 , ILE B:227 , GLU B:230 , ASP E:275 , LEU E:278
BINDING SITE FOR RESIDUE EDO A 260
05
AC5
SOFTWARE
GLY B:-2 , ASP B:2 , CYS D:228 , GLU D:232
BINDING SITE FOR RESIDUE EDO D 258
06
AC6
SOFTWARE
GLY A:219 , ARG A:222 , EOH B:260
BINDING SITE FOR RESIDUE EDO A 261
07
AC7
SOFTWARE
HOH B:134 , HOH B:272 , HOH E:180 , ASN E:283
BINDING SITE FOR RESIDUE EDO B 259
08
AC8
SOFTWARE
GLU A:225 , LEU A:246 , LYS B:220
BINDING SITE FOR RESIDUE EDO A 262
09
AC9
SOFTWARE
LEU B:246
BINDING SITE FOR RESIDUE EDO D 259
10
BC1
SOFTWARE
GLN B:24 , HOH B:280 , ASN C:17 , ASP C:20
BINDING SITE FOR RESIDUE EDO C 258
11
BC2
SOFTWARE
ALA A:27 , ASP A:28
BINDING SITE FOR RESIDUE EOH A 263
12
BC3
SOFTWARE
ASP A:2 , HOH C:67 , CYS C:228 , GLU C:232 , LEU C:239 , VAL C:243
BINDING SITE FOR RESIDUE EOH C 259
13
BC4
SOFTWARE
EDO A:261 , ASP B:250
BINDING SITE FOR RESIDUE EOH B 260
14
BC5
SOFTWARE
GLN B:240 , HOH B:287 , ASP D:2
BINDING SITE FOR RESIDUE EOH B 261
15
BC6
SOFTWARE
HOH A:112 , ASN A:235 , PRO A:237 , GLN A:240 , LEU E:268
BINDING SITE FOR RESIDUE EOH A 264
16
BC7
SOFTWARE
ASN A:17 , ARG A:21 , HOH A:278
BINDING SITE FOR RESIDUE EOH A 265
17
BC8
SOFTWARE
HOH D:76
BINDING SITE FOR RESIDUE EOH D 260
[
close Site info
]
SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_TPM1_CHICK_001 (L15V, chain E/F, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_TPM1_CHICK_001
*
I
171
V
TPM1_CHICK
---
---
E/F
L
15
V
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 6)
Info
All PROSITE Patterns/Profiles
1: EB1_C (A:215-255,B:215-250,C:215-250,D:21...)
2: TROPOMYOSIN (E:263-263,F:263-263)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EB1_C
PS51230
EB1-C terminal (EB1-C) domain profile.
MARE1_HUMAN
185-255
4
A:215-255
B:215-250
C:215-250
D:215-251
2
TROPOMYOSIN
PS00326
Tropomyosins signature.
TPM1_CHICK
232-240
2
E:263-263
F:263-263
[
close PROSITE info
]
Exons
(9, 25)
Info
All Exons
Exon 1.1d (A:1-29 | B:1-29 | C:1-29 | D:1-29 ...)
Exon 1.3 (A:215-223 | B:215-223 | C:215-223 ...)
Exon 1.6 (A:224-252 (gaps) | B:224-250 (gaps...)
Exon 1.7 (A:253-257 | - | - | - | E:5-10 | F...)
Exon 1.8 (- | - | - | - | E:11-29 (gaps) | F...)
Exon 1.10 (- | - | - | - | E:30-35 (gaps) | F...)
Exon 1.11 (- | - | - | - | E:36-262 (gaps) | ...)
Exon 1.12 (- | - | - | - | E:263-269 (gaps) |...)
Exon 1.13b (- | - | - | - | E:270-284 | F:270-...)
View:
Select:
Label:
All Exon Boundaries
01: Boundary -/1.1d
02: Boundary 1.1d/1.3
03: Boundary 1.3/1.6
04: Boundary 1.6/1.7
05: Boundary 1.7/1.8
06: Boundary 1.8/1.10
07: Boundary 1.10/1.11
08: Boundary 1.11/1.12
09: Boundary 1.12/1.13b
10: Boundary 1.13b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1d
ENSGALT00000005572
1d
ENSGALE00000035748
chr10:
5126807-5126694
114
TPM1_CHICK
1-38
38
4
A:1-29
B:1-29
C:1-29
D:1-29
-
-
29
29
29
29
-
-
1.3
ENSGALT00000005572
3
ENSGALE00000035746
chr10:
5125697-5125572
126
TPM1_CHICK
39-80
42
4
A:215-223
B:215-223
C:215-223
D:215-223
-
-
9
9
9
9
-
-
1.6
ENSGALT00000005572
6
ENSGALE00000261249
chr10:
5119184-5119051
134
TPM1_CHICK
81-125
45
4
A:224-252 (gaps)
B:224-250 (gaps)
C:224-250 (gaps)
D:224-251 (gaps)
-
-
32
30
30
31
-
-
1.7
ENSGALT00000005572
7
ENSGALE00000035741
chr10:
5117763-5117646
118
TPM1_CHICK
125-164
40
3
A:253-257
-
-
-
E:5-10
F:5-10
5
-
-
-
6
6
1.8
ENSGALT00000005572
8
ENSGALE00000035743
chr10:
5117525-5117455
71
TPM1_CHICK
165-188
24
2
-
-
-
-
E:11-29 (gaps)
F:11-29 (gaps)
-
-
-
-
21
21
1.10
ENSGALT00000005572
10
ENSGALE00000035749
chr10:
5116647-5116572
76
TPM1_CHICK
188-213
26
2
-
-
-
-
E:30-35 (gaps)
F:30-35 (gaps)
-
-
-
-
7
7
1.11
ENSGALT00000005572
11
ENSGALE00000035745
chr10:
5116155-5116093
63
TPM1_CHICK
214-234
21
2
-
-
-
-
E:36-262 (gaps)
F:36-262 (gaps)
-
-
-
-
21
21
1.12
ENSGALT00000005572
12
ENSGALE00000261199
chr10:
5115818-5115749
70
TPM1_CHICK
235-258
24
2
-
-
-
-
E:263-269 (gaps)
F:263-269 (gaps)
-
-
-
-
23
23
1.13b
ENSGALT00000005572
13b
ENSGALE00000145267
chr10:
5114603-5114519
85
TPM1_CHICK
258-284
27
2
-
-
-
-
E:270-284
F:270-284
-
-
-
-
15
15
[
close EXON info
]
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Tropomyosin_3mtuF01 (F:272-273)
1b: PFAM_Tropomyosin_3mtuF02 (F:272-273)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Tropomyosin-lke
(4)
Family
:
Tropomyosin
(4)
Gallus gallus (Chicken)
(1)
1a
Tropomyosin-3mtuF01
F:272-273
1b
Tropomyosin-3mtuF02
F:272-273
[
close Pfam info
]
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