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3MTF
Biol. Unit 1
Info
Asym.Unit (212 KB)
Biol.Unit 1 (105 KB)
Biol.Unit 2 (104 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE ACVR1 KINASE IN COMPLEX WITH A 2-AMINOPYRIDINE INHIBITOR
Authors
:
A. Chaikuad, C. Sanvitale, C. Cooper, P. Mahajan, N. Daga, K. Petrie, I. P. Canning, T. Krojer, M. Vollmar, S. Knapp, F. Von Delft, J. Weigelt, C. H. Arrowsmith, A. M. Edwards, C. Bountra, A. Bullock, Structural G Consortium (Sgc)
Date
:
30 Apr 10 (Deposition) - 23 Jun 10 (Release) - 18 Jun 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.15
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Protein Kinase, Structural Genomics, Structural Genomics Consortium, Sgc, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. E. Sanvitale, G. Kerr, A. Chaikuad, M. C. Ramel, A. H. Mohedas, S. Reichert, Y. Wang, J. T. Triffitt, G. D. Cuny, P. B. Yu, C. S. Hill, A. N. Bullock
A New Class Of Small Molecule Inhibitor Of Bmp Signaling.
Plos One V. 8 62721 2013
[
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Hetero Components
(3, 15)
Info
All Hetero Components
1a: 3-[6-AMINO-5-(3,4,5-TRIMETHOXYPHEN... (A3Fa)
1b: 3-[6-AMINO-5-(3,4,5-TRIMETHOXYPHEN... (A3Fb)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
2k: 1,2-ETHANEDIOL (EDOk)
2l: 1,2-ETHANEDIOL (EDOl)
2m: 1,2-ETHANEDIOL (EDOm)
2n: 1,2-ETHANEDIOL (EDOn)
2o: 1,2-ETHANEDIOL (EDOo)
2p: 1,2-ETHANEDIOL (EDOp)
2q: 1,2-ETHANEDIOL (EDOq)
3a: PHOSPHATE ION (PO4a)
3b: PHOSPHATE ION (PO4b)
3c: PHOSPHATE ION (PO4c)
3d: PHOSPHATE ION (PO4d)
3e: PHOSPHATE ION (PO4e)
3f: PHOSPHATE ION (PO4f)
3g: PHOSPHATE ION (PO4g)
3h: PHOSPHATE ION (PO4h)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
A3F
1
Ligand/Ion
3-[6-AMINO-5-(3,4,5-TRIMETHOXYPHENYL)PYRIDIN-3-YL]PHENOL
2
EDO
10
Ligand/Ion
1,2-ETHANEDIOL
3
PO4
4
Ligand/Ion
PHOSPHATE ION
[
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Sites
(17, 17)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: CC5 (SOFTWARE)
17: CC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HOH A:140 , HIS A:286 , LYS A:345 , LYS A:346 , HOH A:548 , HOH A:557
BINDING SITE FOR RESIDUE PO4 A 3
02
AC2
SOFTWARE
GLU A:260 , ILE A:262 , GLY A:264 , HIS A:284 , HIS A:286 , LYS A:345
BINDING SITE FOR RESIDUE PO4 A 4
03
AC3
SOFTWARE
PO4 A:8 , HOH A:42 , HOH A:121 , ARG A:380 , ASN A:437 , ASP A:438 , PRO A:439 , HOH A:525 , HOH A:540
BINDING SITE FOR RESIDUE PO4 A 5
04
AC4
SOFTWARE
PO4 A:5 , HOH A:78 , HOH A:93 , LYS A:338 , LYS A:340 , THR A:378 , ARG A:380 , TYR A:381 , HOH A:609
BINDING SITE FOR RESIDUE PO4 A 8
05
AC5
SOFTWARE
SER A:362 , GLN A:367 , ASP A:369 , HOH A:558 , SER B:275
BINDING SITE FOR RESIDUE EDO A 500
06
AC6
SOFTWARE
ARG A:380 , TYR A:432 , VAL A:435 , PRO A:436 , ASN A:437 , HOH A:595
BINDING SITE FOR RESIDUE EDO A 501
07
AC7
SOFTWARE
ARG A:417
BINDING SITE FOR RESIDUE EDO A 7
08
AC8
SOFTWARE
TYR A:432 , ASP A:433 , VAL A:434 , VAL A:435
BINDING SITE FOR RESIDUE EDO A 9
09
AC9
SOFTWARE
CYS A:213 , HOH B:30 , VAL B:424 , HOH B:504
BINDING SITE FOR RESIDUE EDO A 10
10
BC1
SOFTWARE
EDO A:12 , LYS A:400 , ALA A:488 , LEU A:489 , GLN B:363
BINDING SITE FOR RESIDUE EDO A 11
11
BC2
SOFTWARE
EDO A:11 , HIS A:320 , LYS A:400 , THR A:487 , ALA A:488 , HOH A:574 , HOH B:515
BINDING SITE FOR RESIDUE EDO A 12
12
BC3
SOFTWARE
ARG A:335 , TYR A:399 , HOH A:599
BINDING SITE FOR RESIDUE EDO A 13
13
BC4
SOFTWARE
LYS A:243 , ASN A:372 , LYS B:243
BINDING SITE FOR RESIDUE EDO A 18
14
BC5
SOFTWARE
HIS A:274 , ARG A:490
BINDING SITE FOR RESIDUE EDO A 19
15
BC6
SOFTWARE
ALA A:233 , LYS A:235 , GLU A:248 , LEU A:263 , LEU A:281 , THR A:283 , HIS A:284 , TYR A:285 , HIS A:286 , GLY A:289 , SER A:290 , ASP A:293 , LYS A:340 , ASN A:341 , LEU A:343 , ASP A:354 , HOH A:596 , ASN B:459
BINDING SITE FOR RESIDUE A3F A 1
16
CC5
SOFTWARE
THR A:249 , ASN A:253 , SER A:268 , HOH B:579 , HOH B:586 , HOH B:588
BINDING SITE FOR RESIDUE EDO B 15
17
CC6
SOFTWARE
HOH A:176 , SER A:276 , THR A:277 , THR B:254 , MET B:360 , ASP B:369
BINDING SITE FOR RESIDUE EDO B 16
[
close Site info
]
SAPs(SNPs)/Variants
(7, 7)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_028444 (R206H, chain A, )
2: VAR_058420 (D207E, chain A, )
3: VAR_058421 (G328E, chain A, )
4: VAR_058422 (G328R, chain A, )
5: VAR_058423 (G328W, chain A, )
6: VAR_058424 (G356D, chain A, )
7: VAR_058425 (R375P, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
2
UniProt
VAR_028444
R
206
H
ACVR1_HUMAN
Disease (FOP)
---
A
R
206
H
3
UniProt
VAR_058420
Q
207
E
ACVR1_HUMAN
Disease (FOP)
---
A
D
207
E
4
UniProt
VAR_058421
G
328
E
ACVR1_HUMAN
Disease (FOP)
---
A
G
328
E
5
UniProt
VAR_058422
G
328
R
ACVR1_HUMAN
Disease (FOP)
---
A
G
328
R
6
UniProt
VAR_058423
G
328
W
ACVR1_HUMAN
Disease (FOP)
---
A
G
328
W
7
UniProt
VAR_058424
G
356
D
ACVR1_HUMAN
Disease (FOP)
---
A
G
356
D
8
UniProt
VAR_058425
R
375
P
ACVR1_HUMAN
Disease (FOP)
---
A
R
375
P
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: PROTEIN_KINASE_ATP (A:214-235)
2: PROTEIN_KINASE_ST (A:332-344)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
ACVR1_HUMAN
214-235
1
A:214-235
-
2
PROTEIN_KINASE_ST
PS00108
Serine/Threonine protein kinases active-site signature.
ACVR1_HUMAN
332-344
1
A:332-344
-
[
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Exons
(0, 0)
Info
All Exons
View:
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3mtfa_ (A:)
1b: SCOP_d3mtfb_ (B:)
View:
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Label:
Classes
(
)
(
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Folds
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(
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(
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(
)
Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Protein kinase-like (PK-like)
(2589)
Superfamily
:
Protein kinase-like (PK-like)
(2589)
Family
:
Protein kinases, catalytic subunit
(1977)
Protein domain
:
automated matches
(542)
Human (Homo sapiens) [TaxId: 9606]
(452)
1a
d3mtfa_
A:
1b
d3mtfb_
B:
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_Pkinase_3mtfB01 (B:208-495)
1b: PFAM_Pkinase_3mtfB02 (B:208-495)
2a: PFAM_TGF_beta_GS_3mtfB03 (B:202-206)
2b: PFAM_TGF_beta_GS_3mtfB04 (B:202-206)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
PKinase
(934)
Family
:
Pkinase
(680)
Homo sapiens (Human)
(521)
1a
Pkinase-3mtfB01
B:208-495
1b
Pkinase-3mtfB02
B:208-495
Clan
:
no clan defined [family: TGF_beta_GS]
(12)
Family
:
TGF_beta_GS
(12)
Homo sapiens (Human)
(12)
2a
TGF_beta_GS-3mtfB03
B:202-206
2b
TGF_beta_GS-3mtfB04
B:202-206
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Asymmetric Unit 1
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