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3MS3
Asym. Unit
Info
Asym.Unit (117 KB)
Biol.Unit 1 (112 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THERMOLYSIN IN COMPLEX WITH ANILINE
Authors
:
J. Behnen, A. Heine, G. Klebe
Date
:
29 Apr 10 (Deposition) - 11 May 11 (Release) - 15 Feb 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.54
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Protease, Hydrolase, Aniline, Fragement Soaking, Fragment Based Lead Discovery, Metalloprotease, Metal-Binding, Secreted, Zymogen
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Behnen, H. Koster, G. Neudert, T. Craan, A. Heine, G. Klebe
Experimental And Computational Active Site Mapping As A Starting Point To Fragment-Based Lead Discovery.
Chemmedchem V. 7 248 2012
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Hetero Components
(6, 13)
Info
All Hetero Components
1a: ANILINE (ANLa)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
3a: DIMETHYL SULFOXIDE (DMSa)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
4c: GLYCEROL (GOLc)
4d: GLYCEROL (GOLd)
4e: GLYCEROL (GOLe)
5a: ISOPROPYL ALCOHOL (IPAa)
6a: ZINC ION (ZNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ANL
1
Ligand/Ion
ANILINE
2
CA
4
Ligand/Ion
CALCIUM ION
3
DMS
1
Ligand/Ion
DIMETHYL SULFOXIDE
4
GOL
5
Ligand/Ion
GLYCEROL
5
IPA
1
Ligand/Ion
ISOPROPYL ALCOHOL
6
ZN
1
Ligand/Ion
ZINC ION
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:142 , HIS A:146 , GLU A:166 , HOH A:1235
BINDING SITE FOR RESIDUE ZN A 401
02
AC2
SOFTWARE
ASP A:138 , GLU A:177 , ASP A:185 , GLU A:187 , GLU A:190 , HOH A:1012
BINDING SITE FOR RESIDUE CA A 501
03
AC3
SOFTWARE
GLU A:177 , ASN A:183 , ASP A:185 , GLU A:190 , HOH A:1148 , HOH A:1195
BINDING SITE FOR RESIDUE CA A 502
04
AC4
SOFTWARE
ASP A:57 , ASP A:59 , GLN A:61 , HOH A:1034 , HOH A:1049 , HOH A:1068
BINDING SITE FOR RESIDUE CA A 503
05
AC5
SOFTWARE
TYR A:193 , THR A:194 , ILE A:197 , ASP A:200 , HOH A:1109 , HOH A:1196
BINDING SITE FOR RESIDUE CA A 504
06
AC6
SOFTWARE
ASN A:112 , ALA A:113 , VAL A:139 , GLU A:143 , LEU A:202
BINDING SITE FOR RESIDUE ANL A 601
07
AC7
SOFTWARE
ILE A:1 , THR A:2 , GLY A:3 , GLN A:31 , ASN A:33
BINDING SITE FOR RESIDUE IPA A 701
08
AC8
SOFTWARE
GLN A:158 , ASN A:159 , GLU A:160 , SER A:161 , THR A:278 , SER A:279
BINDING SITE FOR RESIDUE GOL A 801
09
AC9
SOFTWARE
GLY A:109 , TYR A:110 , ASN A:111 , ASN A:112 , GLN A:158 , ASN A:227 , HOH A:1223
BINDING SITE FOR RESIDUE GOL A 803
10
BC1
SOFTWARE
PHE A:114 , TRP A:115 , GLU A:143 , HIS A:146 , HOH A:1211 , HOH A:1217
BINDING SITE FOR RESIDUE GOL A 804
11
BC2
SOFTWARE
THR A:152 , GLY A:247 , GLY A:248 , VAL A:255 , GLN A:273 , TYR A:274 , LEU A:275 , HOH A:1036 , HOH A:1067 , HOH A:1119 , HOH A:1170 , HOH A:1187
BINDING SITE FOR RESIDUE GOL A 805
12
BC3
SOFTWARE
PHE A:114 , ASN A:116
BINDING SITE FOR RESIDUE GOL A 806
13
BC4
SOFTWARE
TYR A:66 , HIS A:216 , HOH A:1107
BINDING SITE FOR RESIDUE DMS A 901
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: ZINC_PROTEASE (A:139-148)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZINC_PROTEASE
PS00142
Neutral zinc metallopeptidases, zinc-binding region signature.
THER_BACTH
371-380
1
A:139-148
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3ms3a_ (A:)
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Classes
(
)
(
)
Folds
(
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(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Zincin-like
(701)
Superfamily
:
Metalloproteases (zincins), catalytic domain
(647)
Family
:
Thermolysin-like
(130)
Protein domain
:
Thermolysin
(121)
Bacillus thermoproteolyticus [TaxId: 1427]
(121)
1a
d3ms3a_
A:
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_Peptidase_M4_3ms3A01 (A:4-151)
2a: PFAM_Peptidase_M4_C_3ms3A02 (A:153-315)
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Clans
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Organisms
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)
Clan
:
Peptidase_MA
(251)
Family
:
Peptidase_M4
(54)
Bacillus thermoproteolyticus
(49)
1a
Peptidase_M4-3ms3A01
A:4-151
Family
:
Peptidase_M4_C
(54)
Bacillus thermoproteolyticus
(49)
2a
Peptidase_M4_C-3ms3A02
A:153-315
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Chain A
Asymmetric Unit 1
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Asym.Unit (117 KB)
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