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Getting 'Biological Unit' information from database.
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3MR3
Asym. Unit
Info
Asym.Unit (100 KB)
Biol.Unit 1 (94 KB)
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(1)
Title
:
HUMAN DNA POLYMERASE ETA - DNA TERNARY COMPLEX WITH THE 3'T OF A CPD IN THE ACTIVE SITE (TT1)
Authors
:
C. Biertumpfel, Y. Zhao, S. Ramon-Maiques, M. T. Gregory, J. Y. Lee, W. Y
Date
:
28 Apr 10 (Deposition) - 30 Jun 10 (Release) - 21 Mar 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.75
Chains
:
Asym. Unit : A,P,T
Biol. Unit 1: A,P,T (1x)
Keywords
:
Pol Eta, Polymerase, Thymine Dimer, Cpd, Xpv, Xeroderma Pigmentosum Variant, Dna Damage, Transferase-Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Biertumpfel, Y. Zhao, Y. Kondo, S. Ramon-Maiques, M. Gregory, J. Y. Lee, C. Masutani, A. R. Lehmann, F. Hanaoka, W. Yang
Structure And Mechanism Of Human Dna Polymerase Eta.
Nature V. 465 1044 2010
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Hetero Components
(4, 11)
Info
All Hetero Components
1a: 2'-DEOXY-5'-O-[(R)-HYDROXY{[(R)-HY... (DZ4a)
1b: 2'-DEOXY-5'-O-[(R)-HYDROXY{[(R)-HY... (DZ4b)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
4a: CIS-SYN CYCLOBUTANE THYMINE DIMER (TTDa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
DZ4
2
Ligand/Ion
2'-DEOXY-5'-O-[(R)-HYDROXY{[(R)-HYDROXY(PHOSPHONOOXY)PHOSPHORYL]AMINO}PHOSPHORYL]ADENOSINE
2
GOL
6
Ligand/Ion
GLYCEROL
3
MG
2
Ligand/Ion
MAGNESIUM ION
4
TTD
1
Mod. Nucleotide
CIS-SYN CYCLOBUTANE THYMINE DIMER
[
close Hetero Component info
]
Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:13 , MET A:14 , ASP A:15 , CYS A:16 , PHE A:17 , PHE A:18 , ILE A:48 , ALA A:49 , TYR A:52 , ARG A:55 , ARG A:61 , ASP A:115 , LYS A:231 , MG A:434 , MG A:435 , HOH A:449 , HOH A:461 , HOH A:484 , HOH A:489 , HOH A:491 , HOH A:573 , HOH A:580 , HOH A:600 , DT P:9 , HOH P:57 , TTD T:3 , DA T:4
BINDING SITE FOR RESIDUE DZ4 A 433
02
AC2
SOFTWARE
ASP A:13 , MET A:14 , ASP A:115 , DZ4 A:433 , MG A:435
BINDING SITE FOR RESIDUE MG A 434
03
AC3
SOFTWARE
ASP A:13 , ASP A:115 , GLU A:116 , DZ4 A:433 , MG A:434 , HOH A:449 , DT P:9
BINDING SITE FOR RESIDUE MG A 435
04
AC4
SOFTWARE
ARG A:24 , PRO A:244 , PHE A:247 , SER A:248 , GLY A:276 , GLU A:277 , GOL A:441 , HOH A:448 , HOH A:544 , HOH A:595
BINDING SITE FOR RESIDUE GOL A 436
05
AC5
SOFTWARE
ASN A:26 , PRO A:27 , HIS A:28 , GLY A:271 , ILE A:272 , GLU A:273 , TYR A:274 , GLU A:277 , HOH A:546 , HOH A:638
BINDING SITE FOR RESIDUE GOL A 437
06
AC6
SOFTWARE
PRO A:27 , HIS A:28 , HOH A:601 , HOH A:714 , HOH A:770
BINDING SITE FOR RESIDUE GOL A 438
07
AC7
SOFTWARE
LEU A:342 , HIS A:393
BINDING SITE FOR RESIDUE GOL A 439
08
AC8
SOFTWARE
THR A:3 , GLU A:101 , HIS A:240 , GOL A:441 , HOH A:460 , HOH A:734
BINDING SITE FOR RESIDUE GOL A 440
09
AC9
SOFTWARE
HIS A:240 , VAL A:243 , CYS A:302 , ARG A:303 , GOL A:436 , GOL A:440 , HOH A:544 , HOH A:554
BINDING SITE FOR RESIDUE GOL A 441
10
BC1
SOFTWARE
ARG A:256 , SER A:257 , LEU A:262 , LYS A:293 , ASN A:294 , TRP A:297 , HOH A:798
BINDING SITE FOR RESIDUE DZ4 A 442
[
close Site info
]
SAPs(SNPs)/Variants
(10, 10)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_070836 (R93P, chain A, )
02: VAR_021227 (R111H, chain A, )
03: VAR_021228 (T122P, chain A, )
04: VAR_036220 (G153D, chain A, )
05: VAR_021229 (G209V, chain A, )
06: VAR_021230 (G263V, chain A, )
07: VAR_070837 (V266D, chain A, )
08: VAR_070838 (G295R, chain A, )
09: VAR_021231 (R334W, chain A, )
10: VAR_021232 (R361S, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_070836
R
93
P
POLH_HUMAN
Disease (XPV)
---
A
R
93
P
02
UniProt
VAR_021227
R
111
H
POLH_HUMAN
Disease (XPV)
---
A
R
111
H
03
UniProt
VAR_021228
T
122
P
POLH_HUMAN
Disease (XPV)
---
A
T
122
P
04
UniProt
VAR_036220
G
153
D
POLH_HUMAN
Unclassified
---
A
G
153
D
05
UniProt
VAR_021229
G
209
V
POLH_HUMAN
Polymorphism
2307456
A
G
209
V
06
UniProt
VAR_021230
G
263
V
POLH_HUMAN
Disease (XPV)
---
A
G
263
V
07
UniProt
VAR_070837
V
266
D
POLH_HUMAN
Disease (XPV)
---
A
V
266
D
08
UniProt
VAR_070838
G
295
R
POLH_HUMAN
Disease (XPV)
---
A
G
295
R
09
UniProt
VAR_021231
R
334
W
POLH_HUMAN
Polymorphism
9333548
A
R
334
W
10
UniProt
VAR_021232
R
361
S
POLH_HUMAN
Disease (XPV)
---
A
R
361
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: UMUC (A:9-259)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
UMUC
PS50173
UmuC domain profile.
POLH_HUMAN
9-259
1
A:9-259
[
close PROSITE info
]
Exons
(10, 10)
Info
All Exons
Exon 1.2 (A:1-46)
Exon 1.3 (A:46-91)
Exon 1.4b (A:91-164 (gaps))
Exon 1.5 (A:164-220)
Exon 1.6 (A:221-255)
Exon 1.7 (A:255-295)
Exon 1.8 (A:295-336)
Exon 1.9 (A:337-358)
Exon 1.10 (A:359-415)
Exon 1.11a (A:415-432)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.1a/1.2
02: Boundary 1.2/1.3
03: Boundary 1.3/1.4b
04: Boundary 1.4b/1.5
05: Boundary 1.5/1.6
06: Boundary 1.6/1.7
07: Boundary 1.7/1.8
08: Boundary 1.8/1.9
09: Boundary 1.9/1.10
10: Boundary 1.10/1.11a
11: Boundary 1.11a/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000372236
1a
ENSE00001717994
chr6:
43543887-43544177
291
POLH_HUMAN
-
0
0
-
-
1.2
ENST00000372236
2
ENSE00001457304
chr6:
43550053-43550193
141
POLH_HUMAN
1-46
46
1
A:1-46
46
1.3
ENST00000372236
3
ENSE00002161294
chr6:
43550744-43550878
135
POLH_HUMAN
46-91
46
1
A:46-91
46
1.4b
ENST00000372236
4b
ENSE00000752927
chr6:
43555009-43555226
218
POLH_HUMAN
91-164
74
1
A:91-164 (gaps)
74
1.5
ENST00000372236
5
ENSE00000481500
chr6:
43565433-43565602
170
POLH_HUMAN
164-220
57
1
A:164-220
57
1.6
ENST00000372236
6
ENSE00001172213
chr6:
43568725-43568828
104
POLH_HUMAN
221-255
35
1
A:221-255
35
1.7
ENST00000372236
7
ENSE00001172207
chr6:
43571629-43571748
120
POLH_HUMAN
255-295
41
1
A:255-295
41
1.8
ENST00000372236
8
ENSE00001172201
chr6:
43572352-43572475
124
POLH_HUMAN
295-336
42
1
A:295-336
42
1.9
ENST00000372236
9
ENSE00001172195
chr6:
43572991-43573056
66
POLH_HUMAN
337-358
22
1
A:337-358
22
1.10
ENST00000372236
10
ENSE00001172191
chr6:
43578291-43578460
170
POLH_HUMAN
359-415
57
1
A:359-415
57
1.11a
ENST00000372236
11a
ENSE00001861041
chr6:
43581397-43583397
2001
POLH_HUMAN
415-713
299
1
A:415-432
18
[
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]
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_IMS_3mr3A01 (A:12-228)
2a: PFAM_IMS_C_3mr3A02 (A:284-419)
View:
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Label:
Clans
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Families
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(
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Organisms
(
)
(
)
Clan
:
no clan defined [family: IMS]
(76)
Family
:
IMS
(76)
Homo sapiens (Human)
(14)
1a
IMS-3mr3A01
A:12-228
Clan
:
no clan defined [family: IMS_C]
(74)
Family
:
IMS_C
(74)
Homo sapiens (Human)
(14)
2a
IMS_C-3mr3A02
A:284-419
[
close Pfam info
]
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Chain T
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