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Asym. Unit
Info
Asym.Unit (268 KB)
Biol.Unit 1 (131 KB)
Biol.Unit 2 (132 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A PUTATIVE ENDORIBONUCLEASE L-PSP FROM ENTAMOEBA HISTOLYTICA WITH HIGHER SOLVENT CONTENT AND AN ORDERED N-TERMINAL TAG
Authors
:
Seattle Structural Genomics Center For Infectious Disease (S
Date
:
28 Apr 10 (Deposition) - 12 May 10 (Release) - 12 May 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Keywords
:
Putative Endoribonuclease, Structural Genomics, Seattle Structural Genomics Center For Infectious Disease, Ssgcid, Unknown Function
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Gardberg, J. Abendroth, B. Staker
Crystal Structure Of A Putative Endoribonuclease L-Psp From Entamoeba Histolytica
To Be Published
[
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Hetero Components
(3, 18)
Info
All Hetero Components
1a: CITRATE ANION (FLCa)
1b: CITRATE ANION (FLCb)
1c: CITRATE ANION (FLCc)
1d: CITRATE ANION (FLCd)
1e: CITRATE ANION (FLCe)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FLC
5
Ligand/Ion
CITRATE ANION
2
GOL
6
Ligand/Ion
GLYCEROL
3
SO4
7
Ligand/Ion
SULFATE ION
[
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Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:19 , GLY A:33 , ILE A:35 , PRO A:114 , LYS A:115 , GLU A:120 , HOH A:446 , HOH A:592 , ARG C:105 , ALA C:106 , CYS C:107
BINDING SITE FOR RESIDUE FLC A 140
02
AC2
SOFTWARE
LYS A:76 , THR A:77 , THR A:78 , HOH A:473 , GOL B:145 , GOL C:145
BINDING SITE FOR RESIDUE GOL A 145
03
AC3
SOFTWARE
ARG A:105 , ALA A:106 , CYS A:107 , TYR B:19 , GLY B:33 , PRO B:114 , LYS B:115 , GLU B:120 , HOH B:146 , HOH B:558
BINDING SITE FOR RESIDUE FLC B 140
04
AC4
SOFTWARE
LYS B:73 , HOH B:613 , LYS C:3 , LYS D:73
BINDING SITE FOR RESIDUE SO4 B 150
05
AC5
SOFTWARE
ARG B:39 , HOH B:681
BINDING SITE FOR RESIDUE SO4 B 155
06
AC6
SOFTWARE
GOL A:145 , LYS B:76 , THR B:77 , THR B:78 , GLU B:122 , CYS B:123 , HOH B:634 , GOL C:145
BINDING SITE FOR RESIDUE GOL B 145
07
AC7
SOFTWARE
PHE B:87 , ARG B:105 , ALA B:106 , CYS B:107 , TYR C:19 , GLY C:33 , ILE C:35 , PRO C:114 , LYS C:115 , GLU C:120 , HOH C:686 , HOH C:769
BINDING SITE FOR RESIDUE FLC C 140
08
AC8
SOFTWARE
LYS C:73 , LYS F:73
BINDING SITE FOR RESIDUE SO4 C 150
09
AC9
SOFTWARE
VAL B:16 , GLY B:17 , TYR B:19 , LYS B:115 , HOH B:359 , HOH B:601 , ARG C:39 , HOH C:462 , HOH C:745
BINDING SITE FOR RESIDUE SO4 C 155
10
BC1
SOFTWARE
GOL A:145 , GOL B:145 , HOH B:634 , LYS C:76 , THR C:77 , THR C:78 , GLU C:122 , ILE C:124 , HOH C:157
BINDING SITE FOR RESIDUE GOL C 145
11
BC2
SOFTWARE
TYR D:19 , GLY D:33 , PRO D:114 , LYS D:115 , GLU D:120 , HOH D:593 , HOH D:607 , PHE F:87 , ARG F:105 , ALA F:106 , CYS F:107
BINDING SITE FOR RESIDUE FLC D 140
12
BC3
SOFTWARE
ARG D:39 , HOH D:509 , HOH D:618
BINDING SITE FOR RESIDUE SO4 D 155
13
BC4
SOFTWARE
LYS D:76 , THR D:77 , THR D:78 , GLU D:122 , ILE D:124 , HOH D:676 , GOL E:145 , HOH E:651 , GOL F:145
BINDING SITE FOR RESIDUE GOL D 145
14
BC5
SOFTWARE
LYS A:73 , LYS B:3 , LYS E:73
BINDING SITE FOR RESIDUE SO4 E 150
15
BC6
SOFTWARE
PHE D:87 , ARG D:105 , ALA D:106 , CYS D:107 , TYR E:19 , GLY E:33 , PRO E:114 , LYS E:115 , GLU E:120 , HOH E:481 , HOH E:606
BINDING SITE FOR RESIDUE FLC E 140
16
BC7
SOFTWARE
GOL D:145 , LYS E:76 , THR E:77 , THR E:78 , GLU E:122 , ILE E:124 , HOH E:416 , HOH E:651 , GOL F:145
BINDING SITE FOR RESIDUE GOL E 145
17
BC8
SOFTWARE
ARG F:39
BINDING SITE FOR RESIDUE SO4 F 155
18
BC9
SOFTWARE
GOL D:145 , GOL E:145 , LYS F:76 , THR F:77 , THR F:78 , CYS F:123 , ILE F:124
BINDING SITE FOR RESIDUE GOL F 145
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d3mqwa_ (A:)
1b: SCOP_d3mqwb_ (B:)
1c: SCOP_d3mqwc_ (C:)
1d: SCOP_d3mqwd_ (D:)
1e: SCOP_d3mqwe_ (E:)
1f: SCOP_d3mqwf_ (F:)
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Protein Domains
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(
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Bacillus chorismate mutase-like
(324)
Superfamily
:
YjgF-like
(45)
Family
:
automated matches
(12)
Protein domain
:
automated matches
(12)
Entamoeba (Entamoeba histolytica) [TaxId: 5759]
(1)
1a
d3mqwa_
A:
1b
d3mqwb_
B:
1c
d3mqwc_
C:
1d
d3mqwd_
D:
1e
d3mqwe_
E:
1f
d3mqwf_
F:
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 6)
Info
all PFAM domains
1a: PFAM_Ribonuc_L_PSP_3mqwF01 (F:9-127)
1b: PFAM_Ribonuc_L_PSP_3mqwF02 (F:9-127)
1c: PFAM_Ribonuc_L_PSP_3mqwF03 (F:9-127)
1d: PFAM_Ribonuc_L_PSP_3mqwF04 (F:9-127)
1e: PFAM_Ribonuc_L_PSP_3mqwF05 (F:9-127)
1f: PFAM_Ribonuc_L_PSP_3mqwF06 (F:9-127)
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Clans
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(
)
Clan
:
no clan defined [family: Ribonuc_L-PSP]
(16)
Family
:
Ribonuc_L-PSP
(16)
Entamoeba histolytica
(3)
1a
Ribonuc_L-PSP-3mqwF01
F:9-127
1b
Ribonuc_L-PSP-3mqwF02
F:9-127
1c
Ribonuc_L-PSP-3mqwF03
F:9-127
1d
Ribonuc_L-PSP-3mqwF04
F:9-127
1e
Ribonuc_L-PSP-3mqwF05
F:9-127
1f
Ribonuc_L-PSP-3mqwF06
F:9-127
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Asymmetric Unit 1
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