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3MQH
Asym. Unit
Info
Asym.Unit (236 KB)
Biol.Unit 1 (117 KB)
Biol.Unit 2 (115 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE 3-N-ACETYL TRANSFERASE WLBB FROM BORDETELLA PETRII IN COMPLEX WITH COA AND UDP-3-AMINO-2-ACETAMIDO-2,3-DIDEOXY GLUCURONIC ACID
Authors
:
J. B. Thoden, H. M. Holden
Date
:
28 Apr 10 (Deposition) - 12 May 10 (Release) - 16 Jun 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.43
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Keywords
:
Beta Helix, Acetyltransferase, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. B. Thoden, H. M. Holden
Molecular Structure Of Wlbb, A Bacterial N-Acetyltransferase Involved In The Biosynthesis Of 2, 3-Diacetamido-2, 3-Dideoxy-D-Mannuronic Acid .
Biochemistry V. 49 4644 2010
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Hetero Components
(6, 29)
Info
All Hetero Components
1a: COENZYME A (COAa)
1b: COENZYME A (COAb)
1c: COENZYME A (COAc)
1d: COENZYME A (COAd)
1e: COENZYME A (COAe)
1f: COENZYME A (COAf)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
2k: 1,2-ETHANEDIOL (EDOk)
2l: 1,2-ETHANEDIOL (EDOl)
3a: (2S,3S,4R,5R,6R)-5-(ACETYLAMINO)-4... (MJZa)
3b: (2S,3S,4R,5R,6R)-5-(ACETYLAMINO)-4... (MJZb)
3c: (2S,3S,4R,5R,6R)-5-(ACETYLAMINO)-4... (MJZc)
3d: (2S,3S,4R,5R,6R)-5-(ACETYLAMINO)-4... (MJZd)
3e: (2S,3S,4R,5R,6R)-5-(ACETYLAMINO)-4... (MJZe)
3f: (2S,3S,4R,5R,6R)-5-(ACETYLAMINO)-4... (MJZf)
4a: SODIUM ION (NAa)
4b: SODIUM ION (NAb)
5a: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)... (PE4a)
6a: PHOSPHATE ION (PO4a)
6b: PHOSPHATE ION (PO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
COA
6
Ligand/Ion
COENZYME A
2
EDO
12
Ligand/Ion
1,2-ETHANEDIOL
3
MJZ
6
Ligand/Ion
(2S,3S,4R,5R,6R)-5-(ACETYLAMINO)-4-AMINO-6-{[(R)-{[(R)-{[(2R,3S,4R,5R)-5-(2,4-DIOXO-3,4-DIHYDROPYRIMIDIN-1(2H)-YL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHOXY}(HYDROXY)PHOSPHORYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-3-HYDROXYTETRAHYDRO-2H-PYRAN-2-CARBOXYLIC ACID
4
NA
2
Ligand/Ion
SODIUM ION
5
PE4
1
Ligand/Ion
2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL
6
PO4
2
Ligand/Ion
PHOSPHATE ION
[
close Hetero Component info
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Sites
(29, 29)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TRP A:23 , HIS A:24 , GLN A:42 , GLN A:59 , ASN A:60 , PHE A:75 , HOH A:199 , HOH A:201 , HOH A:202 , HOH A:203 , HOH A:220 , HOH A:322 , HOH A:324 , HOH A:374 , HOH A:445 , HOH A:568 , HOH A:627 , HOH A:671 , HOH A:1102 , HIS C:27 , PHE C:45 , TYR C:65 , ASN C:84 , VAL C:85 , GLU C:93 , ARG C:94 , LYS C:95 , TYR C:98 , COA C:191 , EDO C:195 , HOH C:215
BINDING SITE FOR RESIDUE MJZ A 191
02
AC2
SOFTWARE
THR A:83 , ASN A:84 , VAL A:85 , TYR A:86 , ASN A:134 , PRO A:147 , ARG A:149 , HOH A:198 , HOH A:319 , HOH A:552 , HOH A:914 , HOH A:975 , HOH A:1055 , HOH A:1226 , HOH A:1241 , HOH A:1345 , HOH A:1369 , HOH A:1490 , PHE B:75 , GLY B:110 , ALA B:111 , GLY B:128 , ALA B:129 , VAL B:144 , ILE B:151 , GLN B:160 , MJZ B:191 , HOH B:196
BINDING SITE FOR RESIDUE COA A 192
03
AC3
SOFTWARE
ASP A:66 , HOH A:228 , HOH A:276 , MJZ B:191 , HOH B:200
BINDING SITE FOR RESIDUE EDO A 193
04
AC4
SOFTWARE
ASN A:112 , HOH A:392 , ASN B:112 , HOH B:607 , ASN C:112 , HOH C:354
BINDING SITE FOR RESIDUE NA A 194
05
AC5
SOFTWARE
THR A:3 , ARG A:21 , ILE A:22 , TRP A:23
BINDING SITE FOR RESIDUE EDO A 195
06
AC6
SOFTWARE
HIS A:27 , PHE A:45 , TYR A:65 , ASN A:84 , VAL A:85 , GLU A:93 , ARG A:94 , LYS A:95 , TYR A:98 , COA A:192 , EDO A:193 , TRP B:23 , HIS B:24 , GLN B:42 , LYS B:57 , GLN B:59 , ASN B:60 , PHE B:75 , HOH B:197 , HOH B:200 , HOH B:202 , HOH B:206 , HOH B:218 , HOH B:222 , HOH B:245 , HOH B:261 , HOH B:358 , HOH B:427 , HOH B:493 , HOH B:535 , HOH B:680 , HOH B:1194 , HOH B:1300
BINDING SITE FOR RESIDUE MJZ B 191
07
AC7
SOFTWARE
THR B:83 , ASN B:84 , VAL B:85 , TYR B:86 , ASN B:134 , ARG B:149 , HOH B:223 , HOH B:229 , HOH B:306 , HOH B:592 , HOH B:616 , HOH B:1058 , HOH B:1262 , HOH B:1296 , HOH B:1303 , HOH B:1728 , GLY C:110 , ALA C:111 , GLY C:128 , ALA C:129 , VAL C:144 , ILE C:151 , GLN C:160 , MJZ C:192 , HOH C:208
BINDING SITE FOR RESIDUE COA B 192
08
AC8
SOFTWARE
ASP B:66 , HOH B:208 , HOH B:213 , MJZ C:192 , HOH C:219
BINDING SITE FOR RESIDUE EDO B 193
09
AC9
SOFTWARE
VAL B:133 , ASN B:134 , LYS B:135 , ASP B:136 , VAL B:137 , ALA B:148 , HOH B:741 , HOH B:2400
BINDING SITE FOR RESIDUE EDO B 194
10
BC1
SOFTWARE
GLY A:110 , ALA A:111 , GLY A:128 , ALA A:129 , ILE A:151 , GLN A:160 , MJZ A:191 , HOH A:208 , THR C:83 , ASN C:84 , VAL C:85 , TYR C:86 , PRO C:88 , ASN C:134 , PRO C:147 , ARG C:149 , HOH C:206 , HOH C:338 , HOH C:673 , HOH C:818 , HOH C:842 , HOH C:913 , HOH C:1051 , HOH C:1167 , HOH C:2379 , HOH C:2390
BINDING SITE FOR RESIDUE COA C 191
11
BC2
SOFTWARE
HIS B:27 , PHE B:45 , TYR B:65 , ASN B:84 , VAL B:85 , GLU B:93 , ARG B:94 , LYS B:95 , TYR B:98 , COA B:192 , EDO B:193 , TRP C:23 , HIS C:24 , GLN C:42 , GLN C:59 , ASN C:60 , PHE C:75 , HOH C:207 , HOH C:211 , HOH C:214 , HOH C:217 , HOH C:219 , HOH C:224 , HOH C:228 , HOH C:231 , HOH C:233 , HOH C:320 , HOH C:440 , HOH C:1255 , HOH C:1472 , HOH C:2069 , HOH C:2276
BINDING SITE FOR RESIDUE MJZ C 192
12
BC3
SOFTWARE
ASN A:112 , GLY A:130 , ASN B:112 , GLY B:130 , ASN C:112 , GLY C:130
BINDING SITE FOR RESIDUE PO4 C 193
13
BC4
SOFTWARE
ARG C:15 , GLY C:17 , ILE C:34 , HOH C:827
BINDING SITE FOR RESIDUE EDO C 194
14
BC5
SOFTWARE
MJZ A:191 , PHE C:45 , ASP C:66 , HOH C:209 , HOH C:215 , HOH C:225
BINDING SITE FOR RESIDUE EDO C 195
15
BC6
SOFTWARE
GLY C:35 , ASN C:54 , HOH C:316
BINDING SITE FOR RESIDUE EDO C 196
16
BC7
SOFTWARE
GLU C:33 , ARG C:51 , PHE C:69 , ILE C:102
BINDING SITE FOR RESIDUE PE4 C 197
17
BC8
SOFTWARE
TRP D:23 , HIS D:24 , GLN D:42 , LYS D:57 , GLN D:59 , ASN D:60 , PHE D:75 , HOH D:201 , HOH D:204 , HOH D:205 , HOH D:221 , HOH D:222 , HOH D:234 , HOH D:241 , HOH D:255 , HOH D:257 , HOH D:331 , HOH D:452 , HOH D:576 , HOH D:1165 , HOH D:1295 , HOH D:1399 , HIS F:27 , PHE F:45 , TYR F:65 , ASN F:84 , VAL F:85 , GLU F:93 , ARG F:94 , LYS F:95 , TYR F:98 , COA F:191 , EDO F:194 , HOH F:965
BINDING SITE FOR RESIDUE MJZ D 191
18
BC9
SOFTWARE
THR D:83 , ASN D:84 , VAL D:85 , TYR D:86 , ASN D:134 , PRO D:147 , ARG D:149 , HOH D:198 , HOH D:200 , HOH D:217 , HOH D:458 , HOH D:584 , HOH D:684 , HOH D:1075 , HOH D:1264 , HOH D:1307 , HOH D:1321 , GLY E:110 , ALA E:111 , GLY E:128 , ALA E:129 , VAL E:144 , ILE E:151 , GLN E:160 , MJZ E:191
BINDING SITE FOR RESIDUE COA D 192
19
CC1
SOFTWARE
ARG D:15 , GLY D:17 , ILE D:34 , EDO D:195 , HOH D:226
BINDING SITE FOR RESIDUE EDO D 193
20
CC2
SOFTWARE
PHE D:45 , ASP D:66 , HOH D:212 , HOH D:225 , HOH D:281 , MJZ E:191
BINDING SITE FOR RESIDUE EDO D 194
21
CC3
SOFTWARE
GLY D:35 , ASN D:54 , EDO D:193 , HOH D:233
BINDING SITE FOR RESIDUE EDO D 195
22
CC4
SOFTWARE
ASN D:112 , HOH D:1234 , ASN E:112 , HOH E:554 , ASN F:112 , HOH F:208
BINDING SITE FOR RESIDUE NA D 196
23
CC5
SOFTWARE
HIS D:27 , PHE D:45 , TYR D:65 , ASN D:84 , VAL D:85 , GLU D:93 , ARG D:94 , LYS D:95 , TYR D:98 , COA D:192 , EDO D:194 , HOH D:212 , HOH D:1747 , TRP E:23 , HIS E:24 , GLN E:42 , LYS E:57 , GLN E:59 , ASN E:60 , PHE E:75 , HOH E:196 , HOH E:201 , HOH E:203 , HOH E:207 , HOH E:208 , HOH E:212 , HOH E:225 , HOH E:252 , HOH E:328 , HOH E:357 , HOH E:469 , HOH E:505 , HOH E:1443
BINDING SITE FOR RESIDUE MJZ E 191
24
CC6
SOFTWARE
ASN E:84 , VAL E:85 , TYR E:86 , ASN E:134 , HOH E:218 , HOH E:228 , HOH E:483 , HOH E:634 , HOH E:852 , HOH E:1237 , HOH E:1418 , PRO F:78 , GLY F:110 , ALA F:111 , GLY F:128 , ALA F:129 , VAL F:144 , ILE F:151 , GLN F:160 , MJZ F:192 , HOH F:201
BINDING SITE FOR RESIDUE COA E 192
25
CC7
SOFTWARE
GLY E:47 , ASP E:66 , HOH E:227 , HOH E:351 , MJZ F:192 , HOH F:518
BINDING SITE FOR RESIDUE EDO E 193
26
CC8
SOFTWARE
GLY D:110 , ALA D:111 , GLY D:128 , ALA D:129 , VAL D:144 , ILE D:151 , GLN D:160 , MJZ D:191 , THR F:83 , ASN F:84 , VAL F:85 , TYR F:86 , ASN F:134 , PRO F:147 , ARG F:149 , HOH F:202 , HOH F:213 , HOH F:386 , HOH F:474 , HOH F:893 , HOH F:1046 , HOH F:1227 , HOH F:1243 , HOH F:1279 , HOH F:1522 , HOH F:1535
BINDING SITE FOR RESIDUE COA F 191
27
CC9
SOFTWARE
HIS E:27 , PHE E:45 , TYR E:65 , ASN E:84 , VAL E:85 , GLU E:93 , ARG E:94 , LYS E:95 , TYR E:98 , COA E:192 , EDO E:193 , HOH E:233 , HOH E:242 , HOH E:1683 , TRP F:23 , HIS F:24 , GLN F:42 , GLN F:59 , ASN F:60 , PHE F:75 , HOH F:207 , HOH F:211 , HOH F:214 , HOH F:219 , HOH F:231 , HOH F:265 , HOH F:297 , HOH F:323 , HOH F:441 , HOH F:518 , HOH F:737 , HOH F:883
BINDING SITE FOR RESIDUE MJZ F 192
28
DC1
SOFTWARE
ASN D:112 , GLY D:130 , ASN E:112 , GLY E:130 , ASN F:112 , GLY F:130
BINDING SITE FOR RESIDUE PO4 F 193
29
DC2
SOFTWARE
MJZ D:191 , HOH D:257 , PHE F:45 , GLY F:47 , ASP F:66 , HOH F:409 , HOH F:432
BINDING SITE FOR RESIDUE EDO F 194
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Asym.Unit (236 KB)
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