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3MQE
Biol. Unit 2
Info
Asym.Unit (759 KB)
Biol.Unit 1 (377 KB)
Biol.Unit 2 (377 KB)
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(1)
Title
:
STRUCTURE OF SC-75416 BOUND AT THE COX-2 ACTIVE SITE
Authors
:
J. L. Wang, D. Limburg, M. J. Graneto, J. Springer, J. Rogier, J. R. Kiefe
Date
:
28 Apr 10 (Deposition) - 27 Oct 10 (Release) - 01 Dec 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Cox2, Cox-2, Pgh2S-2, Cyclooxygenase-2, Dioxygenase, Disulfide Bond, Endoplasmic Reticulum, Fatty Acid Biosynthesis, Glycoprotein, Heme, Iron, Lipid Synthesis, Membrane, Metal-Binding, Microsome, Oxidoreductase, Peroxidase, Phosphoprotein, Prostaglandin Biosynthesis
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. L. Wang, D. Limburg, M. J. Graneto, J. Springer, J. R. Hamper, S. Liao J. L. Pawlitz, R. G. Kurumbail, T. Maziasz, J. J. Talley, J. R. Kiefer, J. Carter
The Novel Benzopyran Class Of Selective Cyclooxygenase-2 Inhibitors. Part 2: The Second Clinical Candidate Having A Shorter And Favorable Human Half-Life.
Bioorg. Med. Chem. Lett. V. 20 7159 2010
[
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Hetero Components
(4, 15)
Info
All Hetero Components
1a: (2S)-7-TERT-BUTYL-6-CHLORO-2-(TRIF... (416a)
1b: (2S)-7-TERT-BUTYL-6-CHLORO-2-(TRIF... (416b)
1c: (2S)-7-TERT-BUTYL-6-CHLORO-2-(TRIF... (416c)
1d: (2S)-7-TERT-BUTYL-6-CHLORO-2-(TRIF... (416d)
2a: B-OCTYLGLUCOSIDE (BOGa)
2b: B-OCTYLGLUCOSIDE (BOGb)
3a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
3b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
3c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
3d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
4g: N-ACETYL-D-GLUCOSAMINE (NAGg)
4h: N-ACETYL-D-GLUCOSAMINE (NAGh)
4i: N-ACETYL-D-GLUCOSAMINE (NAGi)
4j: N-ACETYL-D-GLUCOSAMINE (NAGj)
4k: N-ACETYL-D-GLUCOSAMINE (NAGk)
4l: N-ACETYL-D-GLUCOSAMINE (NAGl)
4m: N-ACETYL-D-GLUCOSAMINE (NAGm)
4n: N-ACETYL-D-GLUCOSAMINE (NAGn)
4o: N-ACETYL-D-GLUCOSAMINE (NAGo)
4p: N-ACETYL-D-GLUCOSAMINE (NAGp)
4q: N-ACETYL-D-GLUCOSAMINE (NAGq)
4r: N-ACETYL-D-GLUCOSAMINE (NAGr)
4s: N-ACETYL-D-GLUCOSAMINE (NAGs)
4t: N-ACETYL-D-GLUCOSAMINE (NAGt)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
416
2
Ligand/Ion
(2S)-7-TERT-BUTYL-6-CHLORO-2-(TRIFLUOROMETHYL)-2H-CHROMENE-3-CARBOXYLIC ACID
2
BOG
1
Ligand/Ion
B-OCTYLGLUCOSIDE
3
HEM
2
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
4
NAG
10
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(15, 15)
Info
All Sites
01: BC7 (SOFTWARE)
02: BC8 (SOFTWARE)
03: BC9 (SOFTWARE)
04: CC1 (SOFTWARE)
05: CC2 (SOFTWARE)
06: CC3 (SOFTWARE)
07: CC4 (SOFTWARE)
08: CC5 (SOFTWARE)
09: CC6 (SOFTWARE)
10: CC7 (SOFTWARE)
11: CC8 (SOFTWARE)
12: CC9 (SOFTWARE)
13: DC1 (SOFTWARE)
14: DC2 (SOFTWARE)
15: DC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
BC7
SOFTWARE
GLN C:189 , HIS C:193 , PHE C:196 , THR C:198 , HIS C:200 , ASN C:368 , TYR C:371 , HIS C:372 , HIS C:374
BINDING SITE FOR RESIDUE HEM C 605
02
BC8
SOFTWARE
PRO C:25 , TYR C:40 , GLU C:52 , ASN C:53
BINDING SITE FOR RESIDUE NAG C 661
03
BC9
SOFTWARE
GLU C:126 , ASN C:130 , TYR C:133 , ARG C:202 , NAG C:672
BINDING SITE FOR RESIDUE NAG C 671
04
CC1
SOFTWARE
ARG C:202 , NAG C:671 , NAG C:673
BINDING SITE FOR RESIDUE NAG C 672
05
CC2
SOFTWARE
NAG C:672
BINDING SITE FOR RESIDUE NAG C 673
06
CC3
SOFTWARE
HOH C:9 , ASN C:396
BINDING SITE FOR RESIDUE NAG C 681
07
CC4
SOFTWARE
GLU C:165 , LYS C:166 , ARG C:170 , ARG C:171 , ARG C:424 , GLU C:472 , GLU C:476 , LYS D:161 , GLU D:165 , ARG D:170
BINDING SITE FOR RESIDUE BOG C 703
08
CC5
SOFTWARE
ARG C:106 , VAL C:335 , TYR C:341 , TYR C:371 , TRP C:373 , VAL C:509 , GLY C:512 , ALA C:513 , SER C:516
BINDING SITE FOR RESIDUE 416 C 701
09
CC6
SOFTWARE
ALA D:185 , GLN D:189 , HIS D:193 , PHE D:196 , LYS D:197 , THR D:198 , HIS D:200 , VAL D:281 , ASN D:368 , HIS D:372 , HIS D:374 , LEU D:377
BINDING SITE FOR RESIDUE HEM D 605
10
CC7
SOFTWARE
TYR D:40 , GLU D:52 , ASN D:53
BINDING SITE FOR RESIDUE NAG D 661
11
CC8
SOFTWARE
LEU C:224 , GLU D:126 , ASN D:130 , TYR D:133 , ARG D:202 , NAG D:672
BINDING SITE FOR RESIDUE NAG D 671
12
CC9
SOFTWARE
HOH D:15 , ARG D:202 , NAG D:671 , NAG D:673
BINDING SITE FOR RESIDUE NAG D 672
13
DC1
SOFTWARE
HOH D:15 , HOH D:609 , NAG D:672
BINDING SITE FOR RESIDUE NAG D 673
14
DC2
SOFTWARE
GLN D:392 , ASN D:396 , GLU D:402
BINDING SITE FOR RESIDUE NAG D 681
15
DC3
SOFTWARE
VAL D:335 , LEU D:338 , TYR D:341 , TYR D:371 , TRP D:373 , VAL D:509 , GLY D:512 , ALA D:513 , SER D:516
BINDING SITE FOR RESIDUE 416 D 701
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: PEROXIDASE_3 (C:96-569,D:96-569)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PEROXIDASE_3
PS50292
Animal heme peroxidase superfamily profile.
PGH2_MOUSE
96-598
2
-
-
C:96-569
D:96-569
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Exons
(0, 0)
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All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
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CATH Domains
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Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_An_peroxidase_3mqeD01 (D:204-568)
1b: PFAM_An_peroxidase_3mqeD02 (D:204-568)
1c: PFAM_An_peroxidase_3mqeD03 (D:204-568)
1d: PFAM_An_peroxidase_3mqeD04 (D:204-568)
1e: PFAM_An_peroxidase_3mqeD05 (D:204-568)
1f: PFAM_An_peroxidase_3mqeD06 (D:204-568)
1g: PFAM_An_peroxidase_3mqeD07 (D:204-568)
1h: PFAM_An_peroxidase_3mqeD08 (D:204-568)
View:
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Clans
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)
(
)
Families
(
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(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: An_peroxidase]
(45)
Family
:
An_peroxidase
(45)
Mus musculus (Mouse)
(11)
1a
An_peroxidase-3mqeD01
D:204-568
1b
An_peroxidase-3mqeD02
D:204-568
1c
An_peroxidase-3mqeD03
D:204-568
1d
An_peroxidase-3mqeD04
D:204-568
1e
An_peroxidase-3mqeD05
D:204-568
1f
An_peroxidase-3mqeD06
D:204-568
1g
An_peroxidase-3mqeD07
D:204-568
1h
An_peroxidase-3mqeD08
D:204-568
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Asymmetric Unit 1
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Asym.Unit (759 KB)
Header - Asym.Unit
Biol.Unit 1 (377 KB)
Header - Biol.Unit 1
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