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3MQ1
Biol. Unit 2
Info
Asym.Unit (224 KB)
Biol.Unit 1 (217 KB)
Biol.Unit 2 (79 KB)
Biol.Unit 3 (74 KB)
Biol.Unit 4 (69 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF DUST MITE ALLERGEN DER P 5
Authors
:
G. A. Mueller, R. A. Gosavi, J. M. Krahn, L. L. Edwards, M. J. Cuneo, J. Gle A. Pomes, M. D. Chapman, R. E. London, L. C. Pedersen
Date
:
27 Apr 10 (Deposition) - 02 Jun 10 (Release) - 24 Nov 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Biol. Unit 2: A,B (1x)
Biol. Unit 3: C,D (1x)
Biol. Unit 4: E,F (1x)
Keywords
:
Allergen, Dust Mite
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. A. Mueller, R. A. Gosavi, J. M. Krahn, L. L. Edwards, M. J. Cuneo, J. Glesner, A. Pomes, M. D. Chapman, R. E. London, L. C. Pedersen
Der P 5 Crystal Structure Provides Insight Into The Group 5 Dust Mite Allergens.
J. Biol. Chem. V. 285 25394 2010
[
close entry info
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Hetero Components
(3, 19)
Info
All Hetero Components
1a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
1b: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDb)
1c: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDc)
1d: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDd)
1e: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDe)
1f: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDf)
1g: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDg)
1h: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDh)
1i: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDi)
1j: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDj)
1k: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDk)
1l: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDl)
1m: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDm)
1n: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDn)
1o: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDo)
1p: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDp)
1q: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDq)
2a: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDa)
2b: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDb)
2c: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDc)
2d: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDd)
2e: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDe)
2f: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDf)
2g: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDg)
2h: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDh)
2i: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDi)
2j: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDj)
2k: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDk)
2l: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDl)
2m: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDm)
2n: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDn)
2o: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDo)
2p: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDp)
2q: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDq)
3a: PHOSPHATE ION (PO4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MPD
11
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
2
MRD
7
Ligand/Ion
(4R)-2-METHYLPENTANE-2,4-DIOL
3
PO4
1
Ligand/Ion
PHOSPHATE ION
[
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Sites
(20, 20)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC7 (SOFTWARE)
07: AC8 (SOFTWARE)
08: AC9 (SOFTWARE)
09: BC1 (SOFTWARE)
10: BC2 (SOFTWARE)
11: BC3 (SOFTWARE)
12: BC4 (SOFTWARE)
13: BC5 (SOFTWARE)
14: BC6 (SOFTWARE)
15: BC7 (SOFTWARE)
16: BC8 (SOFTWARE)
17: BC9 (SOFTWARE)
18: CC1 (SOFTWARE)
19: CC2 (SOFTWARE)
20: CC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:54 , LYS A:121 , LYS A:122 , MPD A:203 , LYS C:96
BINDING SITE FOR RESIDUE MPD A 201
02
AC2
SOFTWARE
GLY A:45 , ALA A:109 , SER A:112 , MPD A:209 , ILE B:38 , MRD B:204
BINDING SITE FOR RESIDUE MRD A 202
03
AC3
SOFTWARE
GLU A:54 , HIS A:58 , MPD A:201 , TYR D:51
BINDING SITE FOR RESIDUE MPD A 203
04
AC4
SOFTWARE
ASP A:119 , LYS A:122 , GLU A:123 , ARG A:126 , HOH A:216 , LYS C:96
BINDING SITE FOR RESIDUE MPD A 204
05
AC5
SOFTWARE
ARG A:118
BINDING SITE FOR RESIDUE MRD A 207
06
AC7
SOFTWARE
GLY A:45 , MET A:81 , MRD A:202 , ALA B:109 , MPD B:200 , MRD B:204 , MRD B:205
BINDING SITE FOR RESIDUE MPD A 209
07
AC8
SOFTWARE
ASP A:69 , LYS A:70 , ALA A:73 , ASP B:97
BINDING SITE FOR RESIDUE MPD A 210
08
AC9
SOFTWARE
GLN A:53 , LEU A:120
BINDING SITE FOR RESIDUE MPD A 200
09
BC1
SOFTWARE
GLU A:102 , ASN A:105 , THR B:77 , MET B:81
BINDING SITE FOR RESIDUE MRD A 133
10
BC2
SOFTWARE
TYR A:51 , LYS A:70 , ASP B:99 , PHE B:101
BINDING SITE FOR RESIDUE MPD A 206
11
BC3
SOFTWARE
GLU A:102 , ASN A:105 , ALA B:48 , GLU B:74
BINDING SITE FOR RESIDUE MRD A 134
12
BC4
SOFTWARE
ILE A:78 , MET A:81 , MPD A:209 , GLU B:102 , ASN B:105
BINDING SITE FOR RESIDUE MPD B 200
13
BC5
SOFTWARE
GLN A:41 , MPD A:209 , ILE B:82 , ALA B:109
BINDING SITE FOR RESIDUE MRD B 205
14
BC6
SOFTWARE
VAL A:88 , ARG A:91 , GLY B:84 , VAL B:88 , ARG B:91 , HOH B:214
BINDING SITE FOR RESIDUE PO4 B 213
15
BC7
SOFTWARE
LEU A:47 , PHE B:101 , ASN B:105 , PHE C:101
BINDING SITE FOR RESIDUE MRD B 201
16
BC8
SOFTWARE
GLY B:45 , MRD B:204
BINDING SITE FOR RESIDUE MPD B 203
17
BC9
SOFTWARE
MRD A:202 , MPD A:209 , MPD B:203
BINDING SITE FOR RESIDUE MRD B 204
18
CC1
SOFTWARE
LEU B:98 , GLN B:103
BINDING SITE FOR RESIDUE MPD B 133
19
CC2
SOFTWARE
MPD A:208 , GLN C:103
BINDING SITE FOR RESIDUE MPD C 212
20
CC7
SOFTWARE
ARG A:126 , LYS C:96
BINDING SITE FOR RESIDUE MRD C 204
[
close Site info
]
SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_ALL5_DERPT_001 (E61A, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_ALL5_DERPT_001
*
E
61
A
ALL5_DERPT
---
---
A/B
E
61
A
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
View:
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
[
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Pfam Domains
(1, 6)
Info
all PFAM domains
1a: PFAM_Blo_t_5_3mq1F01 (F:34-132)
1b: PFAM_Blo_t_5_3mq1F02 (F:34-132)
1c: PFAM_Blo_t_5_3mq1F03 (F:34-132)
1d: PFAM_Blo_t_5_3mq1F04 (F:34-132)
1e: PFAM_Blo_t_5_3mq1F05 (F:34-132)
1f: PFAM_Blo_t_5_3mq1F06 (F:34-132)
View:
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Label:
Clans
(
)
(
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(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: Blo-t-5]
(3)
Family
:
Blo-t-5
(3)
Dermatophagoides pteronyssinus (European house dust mite)
(1)
1a
Blo-t-5-3mq1F01
F:34-132
1b
Blo-t-5-3mq1F02
F:34-132
1c
Blo-t-5-3mq1F03
F:34-132
1d
Blo-t-5-3mq1F04
F:34-132
1e
Blo-t-5-3mq1F05
F:34-132
1f
Blo-t-5-3mq1F06
F:34-132
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