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3MQ1
Biol. Unit 1
Info
Asym.Unit (224 KB)
Biol.Unit 1 (217 KB)
Biol.Unit 2 (79 KB)
Biol.Unit 3 (74 KB)
Biol.Unit 4 (69 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF DUST MITE ALLERGEN DER P 5
Authors
:
G. A. Mueller, R. A. Gosavi, J. M. Krahn, L. L. Edwards, M. J. Cuneo, J. Gle A. Pomes, M. D. Chapman, R. E. London, L. C. Pedersen
Date
:
27 Apr 10 (Deposition) - 02 Jun 10 (Release) - 24 Nov 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Biol. Unit 2: A,B (1x)
Biol. Unit 3: C,D (1x)
Biol. Unit 4: E,F (1x)
Keywords
:
Allergen, Dust Mite
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. A. Mueller, R. A. Gosavi, J. M. Krahn, L. L. Edwards, M. J. Cuneo, J. Glesner, A. Pomes, M. D. Chapman, R. E. London, L. C. Pedersen
Der P 5 Crystal Structure Provides Insight Into The Group 5 Dust Mite Allergens.
J. Biol. Chem. V. 285 25394 2010
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Hetero Components
(0, 0)
Info
All Hetero Components
1a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
1b: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDb)
1c: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDc)
1d: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDd)
1e: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDe)
1f: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDf)
1g: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDg)
1h: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDh)
1i: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDi)
1j: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDj)
1k: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDk)
1l: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDl)
1m: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDm)
1n: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDn)
1o: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDo)
1p: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDp)
1q: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDq)
2a: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDa)
2b: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDb)
2c: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDc)
2d: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDd)
2e: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDe)
2f: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDf)
2g: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDg)
2h: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDh)
2i: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDi)
2j: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDj)
2k: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDk)
2l: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDl)
2m: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDm)
2n: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDn)
2o: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDo)
2p: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDp)
2q: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDq)
3a: PHOSPHATE ION (PO4a)
View:
Select:
Label:
Sorry, no Info available
[
close Hetero component info
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Sites
(34, 34)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:54 , LYS A:121 , LYS A:122 , MPD A:203 , LYS C:96
BINDING SITE FOR RESIDUE MPD A 201
02
AC2
SOFTWARE
GLY A:45 , ALA A:109 , SER A:112 , MPD A:209 , ILE B:38 , MRD B:204
BINDING SITE FOR RESIDUE MRD A 202
03
AC3
SOFTWARE
GLU A:54 , HIS A:58 , MPD A:201 , TYR D:51
BINDING SITE FOR RESIDUE MPD A 203
04
AC4
SOFTWARE
ASP A:119 , LYS A:122 , GLU A:123 , ARG A:126 , HOH A:216 , LYS C:96
BINDING SITE FOR RESIDUE MPD A 204
05
AC5
SOFTWARE
ARG A:118
BINDING SITE FOR RESIDUE MRD A 207
06
AC6
SOFTWARE
MPD C:212
BINDING SITE FOR RESIDUE MPD A 208
07
AC7
SOFTWARE
GLY A:45 , MET A:81 , MRD A:202 , ALA B:109 , MPD B:200 , MRD B:204 , MRD B:205
BINDING SITE FOR RESIDUE MPD A 209
08
AC8
SOFTWARE
ASP A:69 , LYS A:70 , ALA A:73 , ASP B:97
BINDING SITE FOR RESIDUE MPD A 210
09
AC9
SOFTWARE
GLN A:53 , LEU A:120
BINDING SITE FOR RESIDUE MPD A 200
10
BC1
SOFTWARE
GLU A:102 , ASN A:105 , THR B:77 , MET B:81
BINDING SITE FOR RESIDUE MRD A 133
11
BC2
SOFTWARE
TYR A:51 , LYS A:70 , ASP B:99 , PHE B:101
BINDING SITE FOR RESIDUE MPD A 206
12
BC3
SOFTWARE
GLU A:102 , ASN A:105 , ALA B:48 , GLU B:74
BINDING SITE FOR RESIDUE MRD A 134
13
BC4
SOFTWARE
ILE A:78 , MET A:81 , MPD A:209 , GLU B:102 , ASN B:105
BINDING SITE FOR RESIDUE MPD B 200
14
BC5
SOFTWARE
GLN A:41 , MPD A:209 , ILE B:82 , ALA B:109
BINDING SITE FOR RESIDUE MRD B 205
15
BC6
SOFTWARE
VAL A:88 , ARG A:91 , GLY B:84 , VAL B:88 , ARG B:91 , HOH B:214
BINDING SITE FOR RESIDUE PO4 B 213
16
BC7
SOFTWARE
LEU A:47 , PHE B:101 , ASN B:105 , PHE C:101
BINDING SITE FOR RESIDUE MRD B 201
17
BC8
SOFTWARE
GLY B:45 , MRD B:204
BINDING SITE FOR RESIDUE MPD B 203
18
BC9
SOFTWARE
MRD A:202 , MPD A:209 , MPD B:203
BINDING SITE FOR RESIDUE MRD B 204
19
CC1
SOFTWARE
LEU B:98 , GLN B:103
BINDING SITE FOR RESIDUE MPD B 133
20
CC2
SOFTWARE
MPD A:208 , GLN C:103
BINDING SITE FOR RESIDUE MPD C 212
21
CC3
SOFTWARE
ILE C:42 , SER C:112 , MRD C:203 , ILE D:38
BINDING SITE FOR RESIDUE MPD C 200
22
CC4
SOFTWARE
LEU C:92 , GLU C:102 , LEU C:106
BINDING SITE FOR RESIDUE MRD C 201
23
CC5
SOFTWARE
HIS C:39
BINDING SITE FOR RESIDUE MRD C 202
24
CC6
SOFTWARE
ILE C:42 , MPD C:200 , VAL D:85
BINDING SITE FOR RESIDUE MRD C 203
25
CC7
SOFTWARE
ARG A:126 , LYS C:96
BINDING SITE FOR RESIDUE MRD C 204
26
CC8
SOFTWARE
ALA C:48 , GLU C:74
BINDING SITE FOR RESIDUE MPD C 208
27
CC9
SOFTWARE
GLN C:53 , LEU C:120 , GLU C:123 , ASN D:32 , LEU D:34
BINDING SITE FOR RESIDUE MPD D 206
28
DC1
SOFTWARE
LEU C:34 , MET C:35 , LEU D:52 , ILE D:56 , LEU D:120
BINDING SITE FOR RESIDUE MPD D 207
29
DC2
SOFTWARE
TYR C:51 , ASN D:105 , PHE F:101
BINDING SITE FOR RESIDUE MPD D 201
30
DC3
SOFTWARE
LEU E:106 , ALA E:109 , ALA F:48 , MRD F:200
BINDING SITE FOR RESIDUE MRD E 200
31
DC4
SOFTWARE
ALA E:48 , GLN E:55 , GLU E:74 , LEU F:106 , MRD F:204
BINDING SITE FOR RESIDUE MRD E 201
32
DC5
SOFTWARE
GLY E:45 , ALA E:48 , LEU F:89
BINDING SITE FOR RESIDUE MRD E 202
33
DC6
SOFTWARE
LEU E:47 , ALA E:48 , TYR E:51 , MRD E:201 , ASN F:105
BINDING SITE FOR RESIDUE MRD F 204
34
DC7
SOFTWARE
ALA E:109 , MRD E:200 , GLY F:45
BINDING SITE FOR RESIDUE MRD F 200
[
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]
SAPs(SNPs)/Variants
(1, 6)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_ALL5_DERPT_001 (E61A, chain A/B/C/D/E/F, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_ALL5_DERPT_001
*
E
61
A
ALL5_DERPT
---
---
A/B/C/D/E/F
E
61
A
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Label:
Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
[
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Pfam Domains
(1, 6)
Info
all PFAM domains
1a: PFAM_Blo_t_5_3mq1F01 (F:34-132)
1b: PFAM_Blo_t_5_3mq1F02 (F:34-132)
1c: PFAM_Blo_t_5_3mq1F03 (F:34-132)
1d: PFAM_Blo_t_5_3mq1F04 (F:34-132)
1e: PFAM_Blo_t_5_3mq1F05 (F:34-132)
1f: PFAM_Blo_t_5_3mq1F06 (F:34-132)
View:
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: Blo-t-5]
(3)
Family
:
Blo-t-5
(3)
Dermatophagoides pteronyssinus (European house dust mite)
(1)
1a
Blo-t-5-3mq1F01
F:34-132
1b
Blo-t-5-3mq1F02
F:34-132
1c
Blo-t-5-3mq1F03
F:34-132
1d
Blo-t-5-3mq1F04
F:34-132
1e
Blo-t-5-3mq1F05
F:34-132
1f
Blo-t-5-3mq1F06
F:34-132
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