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3MPJ
Asym. Unit
Info
Asym.Unit (397 KB)
Biol.Unit 1 (266 KB)
Biol.Unit 2 (256 KB)
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(1)
Title
:
STRUCTURE OF THE GLUTARYL-COENZYME A DEHYDROGENASE
Authors
:
S. Wischgoll, E. Warkentin, M. Boll, U. Ermler
Date
:
27 Apr 10 (Deposition) - 18 Aug 10 (Release) - 05 Sep 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,D,E,F,G,Y
Biol. Unit 1: A,B,Y (2x)
Biol. Unit 2: D,E,F,G (1x)
Keywords
:
Alpha-Beta Fold, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Wischgoll, U. Demmer, E. Warkentin, R. Gunther, M. Boll, U. Ermler
Structural Basis For Promoting And Preventing Decarboxylation In Glutaryl-Coenzyme A Dehydrogenases.
Biochemistry V. 49 5350 2010
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Hetero Components
(2, 12)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
1f: CHLORIDE ION (CLf)
2a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
2b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
2c: FLAVIN-ADENINE DINUCLEOTIDE (FADc)
2d: FLAVIN-ADENINE DINUCLEOTIDE (FADd)
2e: FLAVIN-ADENINE DINUCLEOTIDE (FADe)
2f: FLAVIN-ADENINE DINUCLEOTIDE (FADf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
6
Ligand/Ion
CHLORIDE ION
2
FAD
6
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
[
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
MET A:92 , PHE A:126 , ILE A:128 , THR A:129 , GLY A:134 , SER A:135 , TRP A:159 , ILE A:160 , SER A:161 , LYS A:204 , MET A:365 , VAL A:366 , GLU A:367 , SER A:369 , ASN A:371 , ILE A:372 , MET A:375 , HOH A:7003 , HOH A:7004 , HOH A:7050 , HOH A:7182 , HOH A:7236 , HOH A:7286 , HOH A:7290 , ARG B:271 , GLN B:273 , PHE B:274 , ILE B:278 , PHE B:281 , GLN B:282 , ASN B:284 , ARG B:340 , ILE B:341 , GLY B:343 , ALA B:344 , HOH B:7079
BINDING SITE FOR RESIDUE FAD A 400
02
AC2
SOFTWARE
ASN A:35 , LYS A:204 , HIS A:208 , HOH A:8012
BINDING SITE FOR RESIDUE CL A 401
03
AC3
SOFTWARE
ARG A:271 , GLN A:273 , PHE A:274 , ILE A:278 , PHE A:281 , GLN A:282 , ASN A:284 , ARG A:340 , ILE A:341 , GLY A:343 , ALA A:344 , TYR A:345 , MET B:92 , PHE B:126 , ILE B:128 , THR B:129 , GLY B:134 , SER B:135 , TRP B:159 , ILE B:160 , SER B:161 , LYS B:204 , MET B:365 , VAL B:366 , GLU B:367 , SER B:369 , ASN B:371 , MET B:375 , HOH B:7006 , HOH B:7011 , HOH B:7012 , HOH B:7021 , HOH B:7080 , HOH B:7129
BINDING SITE FOR RESIDUE FAD B 400
04
AC4
SOFTWARE
ASN B:35 , LYS B:204 , HIS B:208 , HOH B:7361
BINDING SITE FOR RESIDUE CL B 401
05
AC5
SOFTWARE
PHE D:126 , ILE D:128 , THR D:129 , GLY D:134 , SER D:135 , TRP D:159 , ILE D:160 , SER D:161 , MET D:365 , VAL D:366 , GLU D:367 , SER D:369 , ASN D:371 , MET D:375 , HOH D:7422 , HOH D:7424 , HOH D:7436 , HOH D:7481 , HOH D:7586 , HOH D:7689 , HOH D:7981 , ARG E:271 , GLN E:273 , PHE E:274 , PHE E:281 , ASN E:284 , ARG E:340 , ILE E:341 , GLY E:343 , ALA E:344 , TYR E:345 , GLN G:282
BINDING SITE FOR RESIDUE FAD D 400
06
AC6
SOFTWARE
LYS D:204 , HIS D:208
BINDING SITE FOR RESIDUE CL D 401
07
AC7
SOFTWARE
ARG D:271 , GLN D:273 , PHE D:274 , PHE D:281 , ASN D:284 , ARG D:340 , ILE D:341 , GLY D:343 , ALA D:344 , MET E:92 , PHE E:126 , ILE E:128 , THR E:129 , GLY E:134 , SER E:135 , TRP E:159 , SER E:161 , MET E:365 , VAL E:366 , GLU E:367 , SER E:369 , ASN E:371 , MET E:375 , HOH E:7692 , HOH E:7693 , HOH E:7849 , HOH E:7973 , GLN F:282
BINDING SITE FOR RESIDUE FAD E 400
08
AC8
SOFTWARE
ASN E:35 , LYS E:204 , HIS E:208
BINDING SITE FOR RESIDUE CL E 401
09
AC9
SOFTWARE
GLN E:282 , MET F:92 , PHE F:126 , ILE F:128 , THR F:129 , GLY F:134 , SER F:135 , TRP F:159 , SER F:161 , MET F:365 , VAL F:366 , GLU F:367 , SER F:369 , ASN F:371 , MET F:375 , HOH F:7403 , HOH F:7404 , HOH F:7421 , HOH F:7551 , HOH F:7705 , ARG G:271 , GLN G:273 , PHE G:274 , PHE G:281 , ASN G:284 , ARG G:340 , ILE G:341 , GLY G:343 , ALA G:344 , HOH G:7405
BINDING SITE FOR RESIDUE FAD F 400
10
BC1
SOFTWARE
ASN F:35 , LYS F:204 , HIS F:208 , HOH F:7527
BINDING SITE FOR RESIDUE CL F 401
11
BC2
SOFTWARE
GLN D:282 , ARG F:271 , GLN F:273 , PHE F:274 , PHE F:281 , ASN F:284 , ARG F:340 , ILE F:341 , GLY F:343 , ALA F:344 , HOH F:7433 , MET G:92 , PHE G:126 , ILE G:128 , THR G:129 , GLY G:134 , SER G:135 , TRP G:159 , SER G:161 , MET G:365 , VAL G:366 , GLU G:367 , SER G:369 , ASN G:371 , MET G:375 , HOH G:7406 , HOH G:7445 , HOH G:7533 , HOH G:7593 , HOH G:7604 , HOH G:7653 , HOH G:7976
BINDING SITE FOR RESIDUE FAD G 400
12
BC3
SOFTWARE
LYS G:204 , HIS G:208
BINDING SITE FOR RESIDUE CL G 401
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 6)
Info
All PROSITE Patterns/Profiles
1: ACYL_COA_DH_1 (A:127-139,B:127-139,D:127-139,E:12...)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ACYL_COA_DH_1
PS00072
Acyl-CoA dehydrogenases signature 1.
ACD_DESML
127-139
6
A:127-139
B:127-139
D:127-139
E:127-139
F:127-139
G:127-139
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 12)
Info
All SCOP Domains
1a: SCOP_d3mpja2 (A:232-389)
1b: SCOP_d3mpjb2 (B:232-393)
1c: SCOP_d3mpjd2 (D:232-390)
1d: SCOP_d3mpje2 (E:232-391)
1e: SCOP_d3mpjf2 (F:232-390)
1f: SCOP_d3mpjg2 (G:232-389)
2a: SCOP_d3mpja1 (A:1-231)
2b: SCOP_d3mpjb1 (B:1-231)
2c: SCOP_d3mpjd1 (D:1-231)
2d: SCOP_d3mpje1 (E:1-231)
2e: SCOP_d3mpjf1 (F:1-231)
2f: SCOP_d3mpjg1 (G:1-231)
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Protein Domains
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(
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Organisms
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(
)
Class
:
All alpha proteins
(14657)
Fold
:
Bromodomain-like
(339)
Superfamily
:
Acyl-CoA dehydrogenase C-terminal domain-like
(61)
Family
:
automated matches
(29)
Protein domain
:
automated matches
(29)
Desulfococcus multivorans [TaxId: 897]
(2)
1a
d3mpja2
A:232-389
1b
d3mpjb2
B:232-393
1c
d3mpjd2
D:232-390
1d
d3mpje2
E:232-391
1e
d3mpjf2
F:232-390
1f
d3mpjg2
G:232-389
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
Acyl-CoA dehydrogenase NM domain-like
(61)
Superfamily
:
Acyl-CoA dehydrogenase NM domain-like
(61)
Family
:
automated matches
(26)
Protein domain
:
automated matches
(26)
Desulfococcus multivorans [TaxId: 897]
(2)
2a
d3mpja1
A:1-231
2b
d3mpjb1
B:1-231
2c
d3mpjd1
D:1-231
2d
d3mpje1
E:1-231
2e
d3mpjf1
F:1-231
2f
d3mpjg1
G:1-231
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
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Sorry, no Info available
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