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3MO0
Asym. Unit
Info
Asym.Unit (93 KB)
Biol.Unit 1 (46 KB)
Biol.Unit 2 (43 KB)
Biol.Unit 3 (85 KB)
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(1)
Title
:
HUMAN G9A-LIKE (GLP, ALSO KNOWN AS EHMT1) IN COMPLEX WITH INHIBITOR E11
Authors
:
Y. Chang, J. R. Horton, X. Cheng
Date
:
22 Apr 10 (Deposition) - 30 Jun 10 (Release) - 30 Jun 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.78
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: A,B (1x)
Keywords
:
Epigenetics, Histone Lysine Methylation, Enzymatic Inhibition, Lysine Mimics, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Chang, T. Ganesh, J. R. Horton, A. Spannhoff, J. Liu, A. Sun, X. Zhang, M. T. Bedford, Y. Shinkai, J. P. Snyder, X. Cheng
Adding A Lysine Mimic In The Design Of Potent Inhibitors Of Histone Lysine Methyltransferases.
J. Mol. Biol. V. 400 1 2010
[
close entry info
]
Hetero Components
(4, 17)
Info
All Hetero Components
1a: N~4~-(1-BENZYLPIPERIDIN-4-YL)-N~2~... (E11a)
1b: N~4~-(1-BENZYLPIPERIDIN-4-YL)-N~2~... (E11b)
1c: N~4~-(1-BENZYLPIPERIDIN-4-YL)-N~2~... (E11c)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
3a: S-ADENOSYL-L-HOMOCYSTEINE (SAHa)
3b: S-ADENOSYL-L-HOMOCYSTEINE (SAHb)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
4c: ZINC ION (ZNc)
4d: ZINC ION (ZNd)
4e: ZINC ION (ZNe)
4f: ZINC ION (ZNf)
4g: ZINC ION (ZNg)
4h: ZINC ION (ZNh)
4i: ZINC ION (ZNi)
4j: ZINC ION (ZNj)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
E11
3
Ligand/Ion
N~4~-(1-BENZYLPIPERIDIN-4-YL)-N~2~-[3-(DIMETHYLAMINO)PROPYL]-6,7-DIMETHOXYQUINAZOLINE-2,4-DIAMINE
2
EDO
2
Ligand/Ion
1,2-ETHANEDIOL
3
SAH
2
Ligand/Ion
S-ADENOSYL-L-HOMOCYSTEINE
4
ZN
10
Ligand/Ion
ZINC ION
[
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]
Sites
(17, 17)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
MET A:1105 , GLY A:1106 , TRP A:1107 , SER A:1141 , TYR A:1142 , ARG A:1166 , ASN A:1169 , HIS A:1170 , TYR A:1211 , PHE A:1223 , ARG A:1226
BINDING SITE FOR RESIDUE SAH A 101
02
AC2
SOFTWARE
ASN A:1083 , ASP A:1131 , ALA A:1134 , ASP A:1135 , GLU A:1138 , ASP A:1140 , LEU A:1143 , ASP A:1145 , ARG A:1214 , PHE A:1215 , ILE A:1218
BINDING SITE FOR RESIDUE E11 A 2001
03
AC3
SOFTWARE
ZN A:3 , CYS A:1031 , CYS A:1044 , CYS A:1074 , CYS A:1078
BINDING SITE FOR RESIDUE ZN A 1236
04
AC4
SOFTWARE
ZN A:3 , CYS A:1037 , CYS A:1074 , CYS A:1080 , CYS A:1084
BINDING SITE FOR RESIDUE ZN A 2
05
AC5
SOFTWARE
ZN A:2 , CYS A:1031 , CYS A:1033 , CYS A:1037 , CYS A:1042 , ZN A:1236
BINDING SITE FOR RESIDUE ZN A 3
06
AC6
SOFTWARE
CYS A:1172 , CYS A:1225 , CYS A:1227 , CYS A:1232
BINDING SITE FOR RESIDUE ZN A 4
07
AC7
SOFTWARE
HIS A:1027 , HIS A:1076 , HIS A:1185 , CYS B:1014
BINDING SITE FOR RESIDUE ZN A 10
08
AC8
SOFTWARE
ASP A:1131 , ALA A:1134 , ARG A:1137 , GLU A:1138 , ASP A:1140 , LEU A:1143 , ASP A:1145 , ARG A:1214 , PHE A:1215 , ILE A:1218
BINDING SITE FOR RESIDUE E11 A 2002
09
AC9
SOFTWARE
SER A:1132 , ASP A:1135 , VAL A:1136 , GLY B:986 , GLU B:988 , PRO B:991
BINDING SITE FOR RESIDUE EDO B 1
10
BC1
SOFTWARE
ILE B:983 , ARG B:985 , TYR B:1007 , TYR B:1009
BINDING SITE FOR RESIDUE EDO B 2
11
BC2
SOFTWARE
MET B:1105 , GLY B:1106 , TRP B:1107 , SER B:1141 , TYR B:1142 , ARG B:1166 , ASN B:1169 , HIS B:1170 , TYR B:1211 , PHE B:1223 , ARG B:1226 , CYS B:1227
BINDING SITE FOR RESIDUE SAH B 102
12
BC3
SOFTWARE
ALA B:1134 , ASP B:1135 , ARG B:1137 , ASP B:1140 , LEU B:1143 , ASP B:1145 , PHE B:1215 , ILE B:1218
BINDING SITE FOR RESIDUE E11 B 2003
13
BC4
SOFTWARE
CYS B:1031 , CYS B:1044 , CYS B:1074 , CYS B:1078
BINDING SITE FOR RESIDUE ZN B 5
14
BC5
SOFTWARE
CYS B:1037 , CYS B:1074 , CYS B:1080 , CYS B:1084
BINDING SITE FOR RESIDUE ZN B 6
15
BC6
SOFTWARE
CYS B:1031 , CYS B:1033 , CYS B:1037 , CYS B:1042
BINDING SITE FOR RESIDUE ZN B 7
16
BC7
SOFTWARE
CYS B:1172 , CYS B:1225 , CYS B:1227 , CYS B:1232
BINDING SITE FOR RESIDUE ZN B 8
17
BC8
SOFTWARE
CYS A:1014 , HIS B:1027 , HIS B:1076 , HIS B:1185
BINDING SITE FOR RESIDUE ZN B 9
[
close Site info
]
SAPs(SNPs)/Variants
(2, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_069183 (C1044Y, chain A/B, )
2: VAR_036346 (Y1142F, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_069183
C
1075
Y
EHMT1_HUMAN
Disease (KLESTS)
---
A/B
C
1044
Y
2
UniProt
VAR_036346
Y
1173
F
EHMT1_HUMAN
Unclassified
---
A/B
Y
1142
F
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: PRE_SET (A:1029-1092,B:1029-1092)
2: SET (A:1095-1212,B:1095-1212)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PRE_SET
PS50867
Pre-SET domain profile.
EHMT1_HUMAN
1060-1123
2
A:1029-1092
B:1029-1092
2
SET
PS50280
SET domain profile.
EHMT1_HUMAN
1126-1243
2
A:1095-1212
B:1095-1212
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3mo0a_ (A:)
1b: SCOP_d3mo0b_ (B:)
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Protein Domains
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)
(
)
Organisms
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)
(
)
Class
:
All beta proteins
(24004)
Fold
:
beta-clip
(280)
Superfamily
:
SET domain
(44)
Family
:
automated matches
(11)
Protein domain
:
automated matches
(11)
Human (Homo sapiens) [TaxId: 9606]
(11)
1a
d3mo0a_
A:
1b
d3mo0b_
B:
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_Pre_SET_3mo0B01 (B:982-1087)
1b: PFAM_Pre_SET_3mo0B02 (B:982-1087)
2a: PFAM_SET_3mo0B03 (B:1106-1204)
2b: PFAM_SET_3mo0B04 (B:1106-1204)
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Clans
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Organisms
(
)
(
)
Clan
:
no clan defined [family: Pre-SET]
(11)
Family
:
Pre-SET
(11)
Homo sapiens (Human)
(8)
1a
Pre-SET-3mo0B01
B:982-1087
1b
Pre-SET-3mo0B02
B:982-1087
Clan
:
no clan defined [family: SET]
(46)
Family
:
SET
(46)
Homo sapiens (Human)
(34)
2a
SET-3mo0B03
B:1106-1204
2b
SET-3mo0B04
B:1106-1204
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Asym.Unit (93 KB)
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