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Asym. Unit
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Asym.Unit (134 KB)
Biol.Unit 1 (129 KB)
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(1)
Title
:
STRUCTURE OF THE PTP-LIKE PHYTASE FROM SELENOMONAS RUMINANTIUM IN COMPLEX WITH MYO-INOSITOL HEXAKISPHOSPHATE
Authors
:
R. J. Gruninger, L. B. Selinger, S. C. Mosimann
Date
:
20 Apr 10 (Deposition) - 15 Jun 11 (Release) - 17 Apr 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.60
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Phytase, Protein Tyrosine Phosphatase, Inositol Phosphate, Inositol Phosphatase, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. J. Gruninger, S. Dobing, A. D. Smith, L. M. Bruder, L. B. Selinger, H. J. Wieden, S. C. Mosimann
Substrate Binding In Protein-Tyrosine Phosphatase-Like Inositol Polyphosphatases.
J. Biol. Chem. V. 287 9722 2012
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Hetero Components
(5, 14)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
2a: CHLORIDE ION (CLa)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
4a: INOSITOL HEXAKISPHOSPHATE (IHPa)
4b: INOSITOL HEXAKISPHOSPHATE (IHPb)
5a: PHOSPHATE ION (PO4a)
5b: PHOSPHATE ION (PO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
4
Ligand/Ion
ACETATE ION
2
CL
1
Ligand/Ion
CHLORIDE ION
3
GOL
5
Ligand/Ion
GLYCEROL
4
IHP
2
Ligand/Ion
INOSITOL HEXAKISPHOSPHATE
5
PO4
2
Ligand/Ion
PHOSPHATE ION
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:57 , ARG A:68 , ASP A:153 , LYS A:189 , ASP A:223 , HIS A:224 , SER A:252 , GLU A:253 , ALA A:254 , GLY A:255 , VAL A:256 , GLY A:257 , ARG A:258 , LYS A:305 , TYR A:309 , LYS A:312 , GOL A:401 , ACT A:1501 , HOH A:2038 , HOH A:2060 , HOH A:2171 , HOH A:2254 , HOH A:2630 , HOH A:2631 , HOH A:2633 , HOH A:2638 , HOH A:2791
BINDING SITE FOR RESIDUE IHP A 1900
02
AC2
SOFTWARE
ASP A:223 , SER A:252 , GLU A:253 , ALA A:254 , GLY A:255 , VAL A:256 , GLY A:257 , ARG A:258 , HOH A:2038
BINDING SITE FOR RESIDUE PO4 A 1
03
AC3
SOFTWARE
HIS A:224 , LYS A:305 , TYR A:308 , TYR A:309 , LYS A:312 , IHP A:1900 , HOH A:2254
BINDING SITE FOR RESIDUE ACT A 1501
04
AC4
SOFTWARE
TYR A:42 , ARG A:310 , GLU A:311 , ALA A:346 , HOH A:2646
BINDING SITE FOR RESIDUE ACT A 1503
05
AC5
SOFTWARE
TYR A:239 , PRO A:243 , GLN A:244 , LYS A:270 , HOH A:2064 , HOH A:2211 , HOH A:2498
BINDING SITE FOR RESIDUE GOL A 400
06
AC6
SOFTWARE
LYS A:83 , PHE A:289 , PHE A:294 , LYS A:297 , IHP A:1900 , HOH A:2639
BINDING SITE FOR RESIDUE GOL A 401
07
AC7
SOFTWARE
ARG B:57 , ARG B:68 , ASP B:153 , LYS B:189 , ASP B:223 , HIS B:224 , SER B:252 , GLU B:253 , ALA B:254 , GLY B:255 , VAL B:256 , GLY B:257 , ARG B:258 , LYS B:305 , TYR B:309 , LYS B:312 , GOL B:403 , ACT B:1500 , HOH B:2026 , HOH B:2069 , HOH B:2183 , HOH B:2598 , HOH B:2627 , HOH B:2628 , HOH B:2629 , HOH B:2865 , HOH B:2885
BINDING SITE FOR RESIDUE IHP B 1901
08
AC8
SOFTWARE
ASP B:223 , SER B:252 , GLU B:253 , ALA B:254 , GLY B:255 , VAL B:256 , GLY B:257 , ARG B:258 , HOH B:2069
BINDING SITE FOR RESIDUE PO4 B 2
09
AC9
SOFTWARE
HIS B:224 , LYS B:305 , TYR B:308 , TYR B:309 , LYS B:312 , IHP B:1901 , HOH B:2628
BINDING SITE FOR RESIDUE ACT B 1500
10
BC1
SOFTWARE
TYR B:42 , ARG B:310 , GLU B:311 , ALA B:346 , HOH B:2407
BINDING SITE FOR RESIDUE ACT B 1502
11
BC2
SOFTWARE
TYR B:239 , PRO B:243 , GLN B:244 , LYS B:270 , GOL B:404 , HOH B:2035 , HOH B:2236 , HOH B:2370
BINDING SITE FOR RESIDUE GOL B 402
12
BC3
SOFTWARE
LYS B:83 , PHE B:289 , PHE B:294 , ILE B:296 , LYS B:297 , TYR B:309 , IHP B:1901 , HOH B:2821
BINDING SITE FOR RESIDUE GOL B 403
13
BC4
SOFTWARE
THR B:34 , LEU B:242 , PRO B:243 , GLN B:244 , GOL B:402 , HOH B:2798
BINDING SITE FOR RESIDUE GOL B 404
14
BC5
SOFTWARE
THR B:333
BINDING SITE FOR RESIDUE CL B 2000
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
Info
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3mmja_ (A:)
1b: SCOP_d3mmjb_ (B:)
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Organisms
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
(Phosphotyrosine protein) phosphatases II
(296)
Superfamily
:
(Phosphotyrosine protein) phosphatases II
(296)
Family
:
Myo-inositol hexaphosphate phosphohydrolase (phytase) PhyA
(14)
Protein domain
:
Myo-inositol hexaphosphate phosphohydrolase (phytase) PhyA
(10)
Selenomonas ruminantium [TaxId: 971]
(10)
1a
d3mmja_
A:
1b
d3mmjb_
B:
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CATH Domains
(0, 0)
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (134 KB)
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Header - Biol.Unit 1
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