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3MKH
Asym. Unit
Info
Asym.Unit (297 KB)
Biol.Unit 1 (290 KB)
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(1)
Title
:
PODOSPORA ANSERINA NITROALKANE OXIDASE
Authors
:
J. R. Tormos, A. B. Taylor, S. C. Daubner, P. J Hart, P. F. Fitzpatrick
Date
:
14 Apr 10 (Deposition) - 02 Jun 10 (Release) - 30 Jun 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Oxidoreductase Flavoenzyme, Nitroalkane, Acyl-Coa Dehydrogenase, Fad, Flavoprotein, Oxidoreductase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
J. R. Tormos, A. B. Taylor, S. C. Daubner, P. J. Hart, P. F. Fitzpatrick
Identification Of A Hypothetical Protein From Podospora Anserina As A Nitroalkane Oxidase.
Biochemistry V. 49 5035 2010
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Hetero Components
(3, 8)
Info
All Hetero Components
1a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
1b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
1c: FLAVIN-ADENINE DINUCLEOTIDE (FADc)
1d: FLAVIN-ADENINE DINUCLEOTIDE (FADd)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
View:
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Label:
No.
Name
Count
Type
Full Name
1
FAD
4
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
2
MG
2
Ligand/Ion
MAGNESIUM ION
3
SO4
2
Ligand/Ion
SULFATE ION
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LEU A:132 , PHE A:134 , SER A:135 , GLY A:139 , VAL A:140 , ALA A:141 , ASN A:142 , TRP A:170 , ALA A:171 , THR A:172 , VAL A:394 , ILE A:397 , PHE A:398 , ASP A:399 , GLY A:400 , GLY A:401 , VAL A:403 , GLY A:404 , HOH A:449 , HOH A:486 , HOH A:495 , HOH A:551 , HOH A:602 , HOH A:881 , ARG B:301 , LEU B:307 , ARG B:310 , ASN B:372 , ALA B:373 , VAL B:374 , GLY B:375 , ILE B:376 , TYR B:379 , HOH B:456 , GLN D:311
BINDING SITE FOR RESIDUE FAD A 500
2
AC2
SOFTWARE
HOH A:900 , HOH B:925 , HOH B:932 , HOH B:1001 , HOH B:1283 , HOH B:1284
BINDING SITE FOR RESIDUE MG A 439
3
AC3
SOFTWARE
THR A:154 , ARG A:156 , ARG A:190 , HOH A:520 , HOH A:829 , HOH A:1094 , HOH A:1294
BINDING SITE FOR RESIDUE SO4 A 440
4
AC4
SOFTWARE
ARG A:301 , LEU A:307 , ARG A:310 , ASN A:372 , ALA A:373 , VAL A:374 , GLY A:375 , ILE A:376 , HOH A:474 , LEU B:101 , LEU B:132 , PHE B:134 , SER B:135 , GLY B:139 , VAL B:140 , ALA B:141 , ASN B:142 , TRP B:170 , ALA B:171 , THR B:172 , VAL B:394 , ILE B:397 , PHE B:398 , ASP B:399 , GLY B:400 , GLY B:401 , VAL B:403 , GLY B:404 , HOH B:453 , HOH B:483 , HOH B:533 , HOH B:1020 , HOH B:1374 , GLN C:311
BINDING SITE FOR RESIDUE FAD B 500
5
AC5
SOFTWARE
ARG B:156 , ARG B:190 , HOH B:1122 , HOH B:1267
BINDING SITE FOR RESIDUE SO4 B 439
6
AC6
SOFTWARE
GLN B:311 , LEU C:132 , PHE C:134 , SER C:135 , GLY C:139 , VAL C:140 , ALA C:141 , ASN C:142 , TRP C:170 , ALA C:171 , THR C:172 , ILE C:397 , PHE C:398 , ASP C:399 , GLY C:400 , GLY C:401 , VAL C:403 , GLY C:404 , ILE C:405 , HOH C:442 , HOH C:457 , HOH C:581 , HOH C:639 , HOH C:1025 , HOH C:1167 , ARG D:301 , LEU D:307 , ARG D:310 , ASN D:372 , ALA D:373 , VAL D:374 , GLY D:375 , ILE D:376 , TYR D:379 , HOH D:462
BINDING SITE FOR RESIDUE FAD C 500
7
AC7
SOFTWARE
HOH C:977 , HOH D:973 , HOH D:1015 , HOH D:1136 , HOH D:1139 , HOH D:1431
BINDING SITE FOR RESIDUE MG C 439
8
AC8
SOFTWARE
GLN A:311 , ARG C:301 , ARG C:310 , ASN C:372 , ALA C:373 , VAL C:374 , GLY C:375 , ILE C:376 , LEU D:101 , LEU D:132 , PHE D:134 , SER D:135 , GLY D:139 , VAL D:140 , ALA D:141 , ASN D:142 , TRP D:170 , THR D:172 , VAL D:394 , ILE D:397 , PHE D:398 , ASP D:399 , GLY D:400 , GLY D:401 , VAL D:403 , GLY D:404 , HOH D:507 , HOH D:641 , HOH D:658 , HOH D:683
BINDING SITE FOR RESIDUE FAD D 500
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d3mkha2 (A:260-427)
1b: SCOP_d3mkhb2 (B:260-427)
1c: SCOP_d3mkhc2 (C:260-427)
1d: SCOP_d3mkhd2 (D:260-427)
2a: SCOP_d3mkha1 (A:2-259)
2b: SCOP_d3mkhb1 (B:2-259)
2c: SCOP_d3mkhc1 (C:2-259)
2d: SCOP_d3mkhd1 (D:2-259)
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Protein Domains
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Organisms
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Class
:
All alpha proteins
(14657)
Fold
:
Bromodomain-like
(339)
Superfamily
:
Acyl-CoA dehydrogenase C-terminal domain-like
(61)
Family
:
automated matches
(29)
Protein domain
:
automated matches
(29)
Podospora anserina [TaxId: 5145]
(1)
1a
d3mkha2
A:260-427
1b
d3mkhb2
B:260-427
1c
d3mkhc2
C:260-427
1d
d3mkhd2
D:260-427
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
Acyl-CoA dehydrogenase NM domain-like
(61)
Superfamily
:
Acyl-CoA dehydrogenase NM domain-like
(61)
Family
:
automated matches
(26)
Protein domain
:
automated matches
(26)
Podospora anserina [TaxId: 5145]
(1)
2a
d3mkha1
A:2-259
2b
d3mkhb1
B:2-259
2c
d3mkhc1
C:2-259
2d
d3mkhd1
D:2-259
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CATH Domains
(0, 0)
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Pfam Domains
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Chain D
Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
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set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
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show bonds with a radius of 100 units (=0.4Å)
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In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
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Asym.Unit (297 KB)
Header - Asym.Unit
Biol.Unit 1 (290 KB)
Header - Biol.Unit 1
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