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3MK7
Asym. Unit
Info
Asym.Unit (1.4 MB)
Biol.Unit 1 (345 KB)
Biol.Unit 2 (356 KB)
Biol.Unit 3 (346 KB)
Biol.Unit 4 (353 KB)
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(1)
Title
:
THE STRUCTURE OF CBB3 CYTOCHROME OXIDASE
Authors
:
S. Buschmann, E. Warkentin, H. Michel, U. Ermler
Date
:
14 Apr 10 (Deposition) - 04 Aug 10 (Release) - 04 Aug 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.20
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,K,L,M,U,X,Y,Z
Biol. Unit 1: A,B,C,U (1x)
Biol. Unit 2: D,E,F,X (1x)
Biol. Unit 3: G,H,I,Y (1x)
Biol. Unit 4: K,L,M,Z (1x)
Keywords
:
Tm Helices, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Buschmann, E. Warkentin, H. Xie, J. D. Langer, U. Ermler, H. Michel
The Structure Of Cbb3 Cytochrome Oxidase Provides Insights Into Proton Pumping
Science V. 329 327 2010
[
close entry info
]
Hetero Components
(8, 164)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
2a: COPPER (II) ION (CUa)
2b: COPPER (II) ION (CUb)
2c: COPPER (II) ION (CUc)
2d: COPPER (II) ION (CUd)
3a: HEXACYANOFERRATE(3-) (FC6a)
3b: HEXACYANOFERRATE(3-) (FC6b)
3c: HEXACYANOFERRATE(3-) (FC6c)
3d: HEXACYANOFERRATE(3-) (FC6d)
4a: HEME C (HECa)
4b: HEME C (HECb)
4c: HEME C (HECc)
4d: HEME C (HECd)
4e: HEME C (HECe)
4f: HEME C (HECf)
4g: HEME C (HECg)
4h: HEME C (HECh)
4i: HEME C (HECi)
4j: HEME C (HECj)
4k: HEME C (HECk)
4l: HEME C (HECl)
5a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
5b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
5c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
5d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
5e: PROTOPORPHYRIN IX CONTAINING FE (HEMe)
5f: PROTOPORPHYRIN IX CONTAINING FE (HEMf)
5g: PROTOPORPHYRIN IX CONTAINING FE (HEMg)
5h: PROTOPORPHYRIN IX CONTAINING FE (HEMh)
6a: HYDROGEN PEROXIDE (PEOa)
6b: HYDROGEN PEROXIDE (PEOb)
6c: HYDROGEN PEROXIDE (PEOc)
6d: HYDROGEN PEROXIDE (PEOd)
7a: PHOSPHATE ION (PO4a)
7b: PHOSPHATE ION (PO4b)
7c: PHOSPHATE ION (PO4c)
7d: PHOSPHATE ION (PO4d)
8a: (UNKa)
8aa: (UNKaa)
8ab: (UNKab)
8ac: (UNKac)
8ad: (UNKad)
8ae: (UNKae)
8af: (UNKaf)
8ag: (UNKag)
8ah: (UNKah)
8ai: (UNKai)
8aj: (UNKaj)
8ak: (UNKak)
8al: (UNKal)
8am: (UNKam)
8an: (UNKan)
8ao: (UNKao)
8ap: (UNKap)
8aq: (UNKaq)
8ar: (UNKar)
8as: (UNKas)
8at: (UNKat)
8au: (UNKau)
8av: (UNKav)
8aw: (UNKaw)
8ax: (UNKax)
8ay: (UNKay)
8az: (UNKaz)
8b: (UNKb)
8ba: (UNKba)
8bb: (UNKbb)
8bc: (UNKbc)
8bd: (UNKbd)
8be: (UNKbe)
8bf: (UNKbf)
8bg: (UNKbg)
8bh: (UNKbh)
8bi: (UNKbi)
8bj: (UNKbj)
8bk: (UNKbk)
8bl: (UNKbl)
8bm: (UNKbm)
8bn: (UNKbn)
8bo: (UNKbo)
8bp: (UNKbp)
8bq: (UNKbq)
8br: (UNKbr)
8bs: (UNKbs)
8bt: (UNKbt)
8bu: (UNKbu)
8bv: (UNKbv)
8bw: (UNKbw)
8bx: (UNKbx)
8by: (UNKby)
8bz: (UNKbz)
8c: (UNKc)
8ca: (UNKca)
8cb: (UNKcb)
8cc: (UNKcc)
8cd: (UNKcd)
8ce: (UNKce)
8cf: (UNKcf)
8cg: (UNKcg)
8ch: (UNKch)
8ci: (UNKci)
8cj: (UNKcj)
8ck: (UNKck)
8cl: (UNKcl)
8cm: (UNKcm)
8cn: (UNKcn)
8co: (UNKco)
8cp: (UNKcp)
8cq: (UNKcq)
8cr: (UNKcr)
8cs: (UNKcs)
8ct: (UNKct)
8cu: (UNKcu)
8cv: (UNKcv)
8cw: (UNKcw)
8cx: (UNKcx)
8cy: (UNKcy)
8cz: (UNKcz)
8d: (UNKd)
8da: (UNKda)
8db: (UNKdb)
8dc: (UNKdc)
8dd: (UNKdd)
8de: (UNKde)
8df: (UNKdf)
8dg: (UNKdg)
8dh: (UNKdh)
8di: (UNKdi)
8dj: (UNKdj)
8dk: (UNKdk)
8dl: (UNKdl)
8dm: (UNKdm)
8dn: (UNKdn)
8do: (UNKdo)
8dp: (UNKdp)
8e: (UNKe)
8f: (UNKf)
8g: (UNKg)
8h: (UNKh)
8i: (UNKi)
8j: (UNKj)
8k: (UNKk)
8l: (UNKl)
8m: (UNKm)
8n: (UNKn)
8o: (UNKo)
8p: (UNKp)
8q: (UNKq)
8r: (UNKr)
8s: (UNKs)
8t: (UNKt)
8u: (UNKu)
8v: (UNKv)
8w: (UNKw)
8x: (UNKx)
8y: (UNKy)
8z: (UNKz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
8
Ligand/Ion
CALCIUM ION
2
CU
4
Ligand/Ion
COPPER (II) ION
3
FC6
4
Ligand/Ion
HEXACYANOFERRATE(3-)
4
HEC
12
Ligand/Ion
HEME C
5
HEM
8
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
6
PEO
4
Ligand/Ion
HYDROGEN PEROXIDE
7
PO4
4
Ligand/Ion
PHOSPHATE ION
8
UNK
120
Mod. Amino Acid
[
close Hetero Component info
]
Sites
(44, 44)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:122 , TYR A:123 , TRP A:203 , VAL A:210 , LEU A:214 , TYR A:251 , HIS A:257 , SER A:283 , SER A:320 , THR A:321 , GLY A:324 , PRO A:325 , MET A:327 , ALA A:328 , ASN A:333 , HIS A:337 , HIS A:345 , VAL A:346 , GLY A:349 , HEM A:502 , PEO A:508 , SER B:102 , CA B:504
BINDING SITE FOR RESIDUE HEM A 501
02
AC2
SOFTWARE
MET A:29 , GLY A:32 , VAL A:33 , ALA A:36 , ARG A:57 , HIS A:60 , THR A:61 , VAL A:64 , GLU A:122 , TYR A:123 , ASP A:340 , ILE A:343 , VAL A:346 , HIS A:347 , ALA A:350 , LEU A:351 , TYR A:395 , ARG A:437 , GLY A:441 , HEM A:501 , LYS B:103 , CA B:504
BINDING SITE FOR RESIDUE HEM A 502
03
AC3
SOFTWARE
HIS A:207 , HIS A:257 , HIS A:258 , PEO A:508
BINDING SITE FOR RESIDUE CU A 503
04
AC4
SOFTWARE
ARG A:57 , GLU A:122 , HEM A:501 , HEM A:502 , SER B:102
BINDING SITE FOR RESIDUE CA B 504
05
AC5
SOFTWARE
ALA A:124 , LEU A:126 , ASP A:131 , ASN A:179
BINDING SITE FOR RESIDUE CA A 505
06
AC6
SOFTWARE
HIS A:207 , VAL A:210 , HIS A:258 , HEM A:501 , CU A:503
BINDING SITE FOR RESIDUE PEO A 508
07
AC7
SOFTWARE
MET A:273 , ILE A:329 , LYS A:330 , THR A:331 , TYR C:72
BINDING SITE FOR RESIDUE PO4 A 506
08
AC8
SOFTWARE
PHE A:53 , LEU A:427 , CYS B:65 , CYS B:68 , HIS B:69 , THR B:105 , GLY B:106 , PRO B:107 , LEU B:109 , VAL B:112 , TYR B:116 , HIS B:121 , HIS B:124 , LEU B:125 , VAL B:132 , SER B:135 , LYS B:136 , MET B:137 , PRO B:138 , TYR B:140 , MET B:188
BINDING SITE FOR RESIDUE HEC B 211
09
AC9
SOFTWARE
ARG C:166 , ALA C:184 , ALA C:185 , MET C:186 , PRO C:187 , TRP C:189 , THR C:232 , CYS C:233 , CYS C:236 , HIS C:237 , LEU C:247 , GLY C:248 , ALA C:249 , PRO C:250 , TRP C:258 , ILE C:259 , TYR C:260 , LEU C:267 , THR C:270 , ILE C:271 , ARG C:275 , GLY C:277 , HEC C:322 , ILE I:183
BINDING SITE FOR RESIDUE HEC C 321
10
BC1
SOFTWARE
TYR B:116 , SER B:117 , TYR C:142 , CYS C:143 , CYS C:146 , HIS C:147 , GLY C:156 , PHE C:157 , PRO C:158 , TRP C:165 , ARG C:166 , TRP C:167 , ILE C:178 , ALA C:184 , GLY C:277 , GLN C:278 , MET C:279 , PRO C:280 , HEC C:321
BINDING SITE FOR RESIDUE HEC C 322
11
BC2
SOFTWARE
ARG C:206 , PRO C:215 , SER C:263 , LEU C:264 , GLY M:265 , GLN M:266 , GLN M:269 , ARG M:275
BINDING SITE FOR RESIDUE FC6 M 323
12
BC3
SOFTWARE
GLU D:122 , TYR D:123 , TRP D:203 , VAL D:210 , LEU D:214 , TYR D:251 , HIS D:257 , SER D:283 , SER D:320 , THR D:321 , GLY D:324 , PRO D:325 , MET D:327 , ALA D:328 , ASN D:333 , HIS D:337 , HIS D:345 , VAL D:346 , GLY D:349 , HEM D:502 , PEO D:508 , SER E:102 , CA E:504
BINDING SITE FOR RESIDUE HEM D 501
13
BC4
SOFTWARE
MET D:29 , GLY D:32 , VAL D:33 , ALA D:36 , ARG D:57 , HIS D:60 , THR D:61 , VAL D:64 , GLU D:122 , TYR D:123 , ASP D:340 , THR D:342 , ILE D:343 , VAL D:346 , HIS D:347 , ALA D:350 , LEU D:351 , TYR D:395 , ARG D:437 , GLY D:441 , HEM D:501 , LYS E:103 , CA E:504
BINDING SITE FOR RESIDUE HEM D 502
14
BC5
SOFTWARE
HIS D:207 , HIS D:257 , HIS D:258 , PEO D:508
BINDING SITE FOR RESIDUE CU D 503
15
BC6
SOFTWARE
ARG D:57 , GLU D:122 , HEM D:501 , HEM D:502 , SER E:102
BINDING SITE FOR RESIDUE CA E 504
16
BC7
SOFTWARE
ALA D:124 , LEU D:126 , ASP D:131 , ASN D:179
BINDING SITE FOR RESIDUE CA D 505
17
BC8
SOFTWARE
MET D:273 , ILE D:329 , LYS D:330 , THR D:331 , TYR F:72
BINDING SITE FOR RESIDUE PO4 D 506
18
BC9
SOFTWARE
HIS D:207 , VAL D:210 , HIS D:258 , HEM D:501 , CU D:503
BINDING SITE FOR RESIDUE PEO D 508
19
CC1
SOFTWARE
LEU D:427 , CYS E:65 , CYS E:68 , HIS E:69 , THR E:105 , GLY E:106 , PRO E:107 , LEU E:109 , TYR E:116 , HIS E:121 , HIS E:124 , LEU E:125 , VAL E:132 , SER E:135 , LYS E:136 , MET E:137 , PRO E:138 , TYR E:140
BINDING SITE FOR RESIDUE HEC E 211
20
CC2
SOFTWARE
ARG F:166 , ALA F:184 , ALA F:185 , MET F:186 , TRP F:189 , THR F:232 , CYS F:233 , CYS F:236 , HIS F:237 , LEU F:247 , GLY F:248 , ALA F:249 , PRO F:250 , TRP F:258 , ILE F:259 , TYR F:260 , LEU F:267 , THR F:270 , ILE F:271 , ARG F:275 , GLY F:277 , HEC F:322
BINDING SITE FOR RESIDUE HEC F 321
21
CC3
SOFTWARE
TYR E:116 , SER E:117 , TYR F:142 , CYS F:143 , CYS F:146 , HIS F:147 , GLY F:156 , PRO F:158 , LEU F:160 , TRP F:165 , ARG F:166 , TRP F:167 , ILE F:178 , ALA F:184 , GLY F:277 , GLN F:278 , MET F:279 , PRO F:280 , GLN F:282 , LEU F:286 , HEC F:321
BINDING SITE FOR RESIDUE HEC F 322
22
CC4
SOFTWARE
ARG F:206 , PRO F:215 , SER F:263 , LEU F:264 , GLY I:265 , GLN I:266 , GLN I:269 , ARG I:275
BINDING SITE FOR RESIDUE FC6 I 323
23
CC5
SOFTWARE
GLU G:122 , TYR G:123 , TRP G:203 , VAL G:210 , LEU G:214 , TYR G:251 , HIS G:257 , SER G:283 , SER G:320 , GLY G:324 , PRO G:325 , MET G:327 , ALA G:328 , ASN G:333 , HIS G:337 , HIS G:345 , VAL G:346 , GLY G:349 , HEM G:502 , CA G:504 , PEO G:508 , SER H:102
BINDING SITE FOR RESIDUE HEM G 501
24
CC6
SOFTWARE
MET G:29 , GLY G:32 , VAL G:33 , ILE G:35 , ALA G:36 , ARG G:57 , HIS G:60 , THR G:61 , VAL G:64 , GLU G:122 , TYR G:123 , ASP G:340 , THR G:342 , ILE G:343 , VAL G:346 , HIS G:347 , ALA G:350 , LEU G:351 , TYR G:395 , ARG G:437 , HEM G:501 , CA G:504 , LYS H:103
BINDING SITE FOR RESIDUE HEM G 502
25
CC7
SOFTWARE
HIS G:207 , HIS G:257 , HIS G:258 , PEO G:508
BINDING SITE FOR RESIDUE CU G 503
26
CC8
SOFTWARE
ARG G:57 , GLU G:122 , HEM G:501 , HEM G:502 , SER H:102
BINDING SITE FOR RESIDUE CA G 504
27
CC9
SOFTWARE
ALA G:124 , LEU G:126 , ASP G:131 , ASN G:179
BINDING SITE FOR RESIDUE CA G 505
28
DC1
SOFTWARE
HIS G:207 , VAL G:210 , HIS G:258 , HEM G:501 , CU G:503
BINDING SITE FOR RESIDUE PEO G 508
29
DC2
SOFTWARE
MET G:273 , ILE G:329 , LYS G:330 , THR G:331 , TYR I:72
BINDING SITE FOR RESIDUE PO4 G 506
30
DC3
SOFTWARE
CYS H:65 , CYS H:68 , HIS H:69 , THR H:105 , GLY H:106 , PRO H:107 , LEU H:109 , VAL H:112 , TYR H:116 , HIS H:121 , HIS H:124 , LEU H:125 , VAL H:132 , SER H:135 , LYS H:136 , MET H:137 , PRO H:138 , TYR H:140
BINDING SITE FOR RESIDUE HEC H 211
31
DC4
SOFTWARE
ILE C:183 , ARG I:166 , ALA I:184 , ALA I:185 , MET I:186 , PRO I:187 , TRP I:189 , THR I:232 , CYS I:233 , CYS I:236 , HIS I:237 , LEU I:247 , GLY I:248 , ALA I:249 , PRO I:250 , TRP I:258 , ILE I:259 , TYR I:260 , LEU I:267 , THR I:270 , ILE I:271 , GLY I:277 , HEC I:322
BINDING SITE FOR RESIDUE HEC I 321
32
DC5
SOFTWARE
TYR H:116 , SER H:117 , TYR I:142 , CYS I:143 , CYS I:146 , HIS I:147 , GLY I:156 , PHE I:157 , PRO I:158 , LEU I:160 , TRP I:165 , ARG I:166 , TRP I:167 , ILE I:178 , ALA I:184 , GLY I:277 , GLN I:278 , MET I:279 , PRO I:280 , HEC I:321
BINDING SITE FOR RESIDUE HEC I 322
33
DC6
SOFTWARE
GLY F:265 , GLN F:266 , GLN F:269 , ARG F:275 , ARG I:206 , PRO I:215 , SER I:263 , LEU I:264
BINDING SITE FOR RESIDUE FC6 F 323
34
DC7
SOFTWARE
GLU K:122 , TYR K:123 , TRP K:203 , VAL K:210 , LEU K:214 , TYR K:251 , HIS K:257 , SER K:283 , SER K:320 , THR K:321 , GLY K:324 , PRO K:325 , MET K:327 , ALA K:328 , ASN K:333 , HIS K:337 , THR K:342 , HIS K:345 , VAL K:346 , GLY K:349 , HEM K:502 , CA K:504 , PEO K:508 , SER L:102
BINDING SITE FOR RESIDUE HEM K 501
35
DC8
SOFTWARE
MET K:29 , GLY K:32 , VAL K:33 , ILE K:35 , ALA K:36 , ARG K:57 , HIS K:60 , THR K:61 , VAL K:64 , ILE K:65 , GLU K:122 , TYR K:123 , ASP K:340 , THR K:342 , ILE K:343 , VAL K:346 , HIS K:347 , ALA K:350 , LEU K:351 , TYR K:395 , ARG K:437 , GLY K:441 , PHE K:444 , HEM K:501 , CA K:504 , LYS L:103
BINDING SITE FOR RESIDUE HEM K 502
36
DC9
SOFTWARE
HIS K:207 , HIS K:257 , HIS K:258 , PEO K:508
BINDING SITE FOR RESIDUE CU K 503
37
EC1
SOFTWARE
ARG K:57 , GLU K:122 , HEM K:501 , HEM K:502 , SER L:102
BINDING SITE FOR RESIDUE CA K 504
38
EC2
SOFTWARE
ALA K:124 , LEU K:126 , ASP K:131 , ASN K:179
BINDING SITE FOR RESIDUE CA K 505
39
EC3
SOFTWARE
MET K:273 , ILE K:329 , LYS K:330 , THR K:331 , TYR M:72
BINDING SITE FOR RESIDUE PO4 K 506
40
EC4
SOFTWARE
HIS K:207 , VAL K:210 , HIS K:258 , HEM K:501 , CU K:503
BINDING SITE FOR RESIDUE PEO K 508
41
EC5
SOFTWARE
GLU L:63 , CYS L:65 , CYS L:68 , HIS L:69 , THR L:105 , GLY L:106 , PRO L:107 , LEU L:109 , VAL L:112 , TYR L:116 , HIS L:121 , HIS L:124 , LEU L:125 , VAL L:132 , SER L:135 , LYS L:136 , MET L:137 , PRO L:138 , TYR L:140 , MET L:188
BINDING SITE FOR RESIDUE HEC L 211
42
EC6
SOFTWARE
ARG M:166 , ILE M:183 , ALA M:184 , ALA M:185 , MET M:186 , TRP M:189 , THR M:232 , CYS M:233 , CYS M:236 , HIS M:237 , LEU M:247 , GLY M:248 , ALA M:249 , PRO M:250 , TRP M:258 , ILE M:259 , TYR M:260 , LEU M:267 , THR M:270 , ILE M:271 , ARG M:275 , GLY M:277 , HEC M:322
BINDING SITE FOR RESIDUE HEC M 321
43
EC7
SOFTWARE
TYR L:116 , SER L:117 , TYR M:142 , CYS M:143 , CYS M:146 , HIS M:147 , GLY M:156 , PHE M:157 , PRO M:158 , LEU M:160 , TRP M:165 , ARG M:166 , TRP M:167 , ILE M:178 , ALA M:184 , GLY M:277 , GLN M:278 , MET M:279 , PRO M:280 , GLN M:282 , HEC M:321
BINDING SITE FOR RESIDUE HEC M 322
44
EC8
SOFTWARE
GLY C:265 , GLN C:266 , GLN C:269 , ARG C:275 , ARG M:206 , PRO M:215 , SER M:263 , LEU M:264
BINDING SITE FOR RESIDUE FC6 C 323
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 12)
Info
All PROSITE Patterns/Profiles
1: CYTC (C:130-209,F:130-209,I:130-209,M:13...)
2: COX1_CUB (A:203-258,D:203-258,G:203-258,K:20...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CYTC
PS51007
Cytochrome c family profile.
CCOP1_PSEST
130-209
220-302
8
C:130-209
F:130-209
I:130-209
M:130-209
C:220-302
F:220-302
I:220-302
M:220-302
2
COX1_CUB
PS00077
Heme-copper oxidase catalytic subunit, copper B binding region signature.
CCON1_PSEST
203-258
4
A:203-258
D:203-258
G:203-258
K:203-258
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
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]
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Pfam Domains
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Atom Selection
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Protein
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Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Chain G
Chain H
Chain I
Chain K
Chain L
Chain M
Chain U
Chain X
Chain Y
Chain Z
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
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Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
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Asym.Unit (1.4 MB)
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Biol.Unit 1 (345 KB)
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Biol.Unit 3 (346 KB)
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