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Getting 'Biological Unit' information from database.
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Getting 'Hetero Component' information from database.
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Getting 'Site' information from database.
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Getting 'PROSITE' information from database.
3MK2
Biol. Unit 1
Info
Asym.Unit (184 KB)
Biol.Unit 1 (351 KB)
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(1)
Title
:
PLACENTAL ALKALINE PHOSPHATASE COMPLEXED WITH PHE
Authors
:
B. Stec, A. Cheltsov, J. L. Millan
Date
:
13 Apr 10 (Deposition) - 19 Jan 11 (Release) - 05 Oct 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.89
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Phe Binding, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Stec, A. Cheltsov, J. L. Millan
Refined Structures Of Placental Alkaline Phosphatase Show A Consistent Pattern Of Interactions At The Peripheral Site.
Acta Crystallogr. , Sect. F V. 66 866 2010
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Hetero Components
(5, 24)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
2a: CALCIUM ION (CAa)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
4a: MAGNESIUM ION (MGa)
5a: N-ACETYL-D-GLUCOSAMINE (NAGa)
5b: N-ACETYL-D-GLUCOSAMINE (NAGb)
5c: N-ACETYL-D-GLUCOSAMINE (NAGc)
5d: N-ACETYL-D-GLUCOSAMINE (NAGd)
6a: PHENYLALANINE (PHEa)
6b: PHENYLALANINE (PHEb)
7a: PHOSPHOSERINE (SEPa)
8a: ZINC ION (ZNa)
8b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
6
Ligand/Ion
ACETATE ION
2
CA
-1
Ligand/Ion
CALCIUM ION
3
GOL
4
Ligand/Ion
GLYCEROL
4
MG
-1
Ligand/Ion
MAGNESIUM ION
5
NAG
8
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
6
PHE
4
Mod. Amino Acid
PHENYLALANINE
7
SEP
2
Mod. Amino Acid
PHOSPHOSERINE
8
ZN
-1
Ligand/Ion
ZINC ION
[
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:91 , SEP A:92 , PHE A:107 , ARG A:166 , ASP A:316 , HIS A:317 , HIS A:320 , GLU A:429 , HIS A:432 , ZN A:901 , HOH A:1182 , HOH A:1283 , HOH A:1547 , HOH A:1561
BINDING SITE FOR RESIDUE PHE A 912
02
AC2
SOFTWARE
ARG A:125 , GLY A:126 , ARG A:250 , MET A:254 , GLU A:290 , GLU A:293 , ALA A:294 , ARG A:297 , HOH A:1173 , HOH A:1548 , HOH A:1550
BINDING SITE FOR RESIDUE PHE A 923
03
AC3
SOFTWARE
ASN A:122 , LEU A:258 , ARG A:297 , NAG A:802 , HOH A:1396 , HOH A:1441 , HOH A:1485
BINDING SITE FOR RESIDUE NAG A 801
04
AC4
SOFTWARE
ARG A:301 , NAG A:801 , HOH A:1485
BINDING SITE FOR RESIDUE NAG A 802
05
AC5
SOFTWARE
TRP A:248 , ASN A:249 , GLU A:252 , NAG A:804 , HOH A:1076 , HOH A:1104
BINDING SITE FOR RESIDUE NAG A 803
06
AC6
SOFTWARE
ASP A:403 , NAG A:803
BINDING SITE FOR RESIDUE NAG A 804
07
AC7
SOFTWARE
SEP A:92 , ASP A:316 , HIS A:320 , HIS A:432 , PHE A:912
BINDING SITE FOR RESIDUE ZN A 901
08
AC8
SOFTWARE
ASP A:42 , SEP A:92 , ASP A:316 , ASP A:357 , HIS A:358
BINDING SITE FOR RESIDUE ZN A 902
09
AC9
SOFTWARE
ASP A:42 , SER A:155 , GLU A:311 , HOH A:1003 , HOH A:1034 , HOH A:1053
BINDING SITE FOR RESIDUE MG A 903
10
BC1
SOFTWARE
GLU A:216 , PHE A:269 , GLU A:270 , ASP A:285 , HOH A:1246
BINDING SITE FOR RESIDUE CA A 904
11
BC2
SOFTWARE
ALA A:378 , GLY A:380 , LYS A:381 , ALA A:387 , HOH A:1105 , HOH A:1347
BINDING SITE FOR RESIDUE ACT A 933
12
BC3
SOFTWARE
GLU A:277 , ARG A:280 , HOH A:1382
BINDING SITE FOR RESIDUE ACT A 934
13
BC4
SOFTWARE
PHE A:208 , ASN A:232 , VAL A:234 , TYR A:246
BINDING SITE FOR RESIDUE ACT A 935
14
BC5
SOFTWARE
TYR A:217 , GLN A:223 , GLU A:270 , PRO A:271 , HOH A:1172 , HOH A:1406 , HOH A:1448 , HOH A:1477
BINDING SITE FOR RESIDUE GOL A 936
15
BC6
SOFTWARE
GLY A:211 , TYR A:221 , HOH A:1077 , HOH A:1137 , HOH A:1539
BINDING SITE FOR RESIDUE GOL A 937
[
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SAPs(SNPs)/Variants
(5, 10)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_017419 (P3L, chain A, )
2: VAR_050520 (I67L, chain A, )
3: VAR_050521 (R209P, chain A, )
4: VAR_050522 (R241H, chain A, )
5: VAR_050523 (E429G, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_017419
P
25
L
PPB1_HUMAN
Polymorphism
1130335
A
P
3
L
2
UniProt
VAR_050520
I
89
L
PPB1_HUMAN
Polymorphism
13026692
A
I
67
L
3
UniProt
VAR_050521
R
231
P
PPB1_HUMAN
Polymorphism
1048988
A
R
209
P
4
UniProt
VAR_050522
R
263
H
PPB1_HUMAN
Polymorphism
2853378
A
R
241
H
5
UniProt
VAR_050523
E
451
G
PPB1_HUMAN
Polymorphism
1048994
A
E
429
G
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: ALKALINE_PHOSPHATASE (A:89-97)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ALKALINE_PHOSPHATASE
PS00123
Alkaline phosphatase active site.
PPB1_HUMAN
111-119
2
A:89-97
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3mk2a_ (A:)
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Protein Domains
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Organisms
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(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Alkaline phosphatase-like
(78)
Superfamily
:
Alkaline phosphatase-like
(78)
Family
:
Alkaline phosphatase
(56)
Protein domain
:
automated matches
(9)
Human (Homo sapiens) [TaxId: 9606]
(7)
1a
d3mk2a_
A:
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CATH Domains
(0, 0)
Info
all CATH domains
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Label:
Sorry, no Info available
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Alk_phosphatase_3mk2A01 (A:33-468)
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Clans
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Families
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(
)
Organisms
(
)
(
)
Clan
:
Alk_phosphatase
(47)
Family
:
Alk_phosphatase
(22)
Homo sapiens (Human)
(6)
1a
Alk_phosphatase-3mk2A01
A:33-468
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All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Asymmetric Unit 2
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select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
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Asym.Unit (184 KB)
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