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Getting 'Biological Unit' information from database.
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Getting 'Hetero Component' information from database.
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Getting 'Exon' information from database.
3MK2
Asym. Unit
Info
Asym.Unit (184 KB)
Biol.Unit 1 (351 KB)
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(1)
Title
:
PLACENTAL ALKALINE PHOSPHATASE COMPLEXED WITH PHE
Authors
:
B. Stec, A. Cheltsov, J. L. Millan
Date
:
13 Apr 10 (Deposition) - 19 Jan 11 (Release) - 05 Oct 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.89
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Phe Binding, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Stec, A. Cheltsov, J. L. Millan
Refined Structures Of Placental Alkaline Phosphatase Show A Consistent Pattern Of Interactions At The Peripheral Site.
Acta Crystallogr. , Sect. F V. 66 866 2010
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Hetero Components
(8, 16)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
2a: CALCIUM ION (CAa)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
4a: MAGNESIUM ION (MGa)
5a: N-ACETYL-D-GLUCOSAMINE (NAGa)
5b: N-ACETYL-D-GLUCOSAMINE (NAGb)
5c: N-ACETYL-D-GLUCOSAMINE (NAGc)
5d: N-ACETYL-D-GLUCOSAMINE (NAGd)
6a: PHENYLALANINE (PHEa)
6b: PHENYLALANINE (PHEb)
7a: PHOSPHOSERINE (SEPa)
8a: ZINC ION (ZNa)
8b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
3
Ligand/Ion
ACETATE ION
2
CA
1
Ligand/Ion
CALCIUM ION
3
GOL
2
Ligand/Ion
GLYCEROL
4
MG
1
Ligand/Ion
MAGNESIUM ION
5
NAG
4
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
6
PHE
2
Mod. Amino Acid
PHENYLALANINE
7
SEP
1
Mod. Amino Acid
PHOSPHOSERINE
8
ZN
2
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:91 , SEP A:92 , PHE A:107 , ARG A:166 , ASP A:316 , HIS A:317 , HIS A:320 , GLU A:429 , HIS A:432 , ZN A:901 , HOH A:1182 , HOH A:1283 , HOH A:1547 , HOH A:1561
BINDING SITE FOR RESIDUE PHE A 912
02
AC2
SOFTWARE
ARG A:125 , GLY A:126 , ARG A:250 , MET A:254 , GLU A:290 , GLU A:293 , ALA A:294 , ARG A:297 , HOH A:1173 , HOH A:1548 , HOH A:1550
BINDING SITE FOR RESIDUE PHE A 923
03
AC3
SOFTWARE
ASN A:122 , LEU A:258 , ARG A:297 , NAG A:802 , HOH A:1396 , HOH A:1441 , HOH A:1485
BINDING SITE FOR RESIDUE NAG A 801
04
AC4
SOFTWARE
ARG A:301 , NAG A:801 , HOH A:1485
BINDING SITE FOR RESIDUE NAG A 802
05
AC5
SOFTWARE
TRP A:248 , ASN A:249 , GLU A:252 , NAG A:804 , HOH A:1076 , HOH A:1104
BINDING SITE FOR RESIDUE NAG A 803
06
AC6
SOFTWARE
ASP A:403 , NAG A:803
BINDING SITE FOR RESIDUE NAG A 804
07
AC7
SOFTWARE
SEP A:92 , ASP A:316 , HIS A:320 , HIS A:432 , PHE A:912
BINDING SITE FOR RESIDUE ZN A 901
08
AC8
SOFTWARE
ASP A:42 , SEP A:92 , ASP A:316 , ASP A:357 , HIS A:358
BINDING SITE FOR RESIDUE ZN A 902
09
AC9
SOFTWARE
ASP A:42 , SER A:155 , GLU A:311 , HOH A:1003 , HOH A:1034 , HOH A:1053
BINDING SITE FOR RESIDUE MG A 903
10
BC1
SOFTWARE
GLU A:216 , PHE A:269 , GLU A:270 , ASP A:285 , HOH A:1246
BINDING SITE FOR RESIDUE CA A 904
11
BC2
SOFTWARE
ALA A:378 , GLY A:380 , LYS A:381 , ALA A:387 , HOH A:1105 , HOH A:1347
BINDING SITE FOR RESIDUE ACT A 933
12
BC3
SOFTWARE
GLU A:277 , ARG A:280 , HOH A:1382
BINDING SITE FOR RESIDUE ACT A 934
13
BC4
SOFTWARE
PHE A:208 , ASN A:232 , VAL A:234 , TYR A:246
BINDING SITE FOR RESIDUE ACT A 935
14
BC5
SOFTWARE
TYR A:217 , GLN A:223 , GLU A:270 , PRO A:271 , HOH A:1172 , HOH A:1406 , HOH A:1448 , HOH A:1477
BINDING SITE FOR RESIDUE GOL A 936
15
BC6
SOFTWARE
GLY A:211 , TYR A:221 , HOH A:1077 , HOH A:1137 , HOH A:1539
BINDING SITE FOR RESIDUE GOL A 937
[
close Site info
]
SAPs(SNPs)/Variants
(5, 5)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_017419 (P3L, chain A, )
2: VAR_050520 (I67L, chain A, )
3: VAR_050521 (R209P, chain A, )
4: VAR_050522 (R241H, chain A, )
5: VAR_050523 (E429G, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_017419
P
25
L
PPB1_HUMAN
Polymorphism
1130335
A
P
3
L
2
UniProt
VAR_050520
I
89
L
PPB1_HUMAN
Polymorphism
13026692
A
I
67
L
3
UniProt
VAR_050521
R
231
P
PPB1_HUMAN
Polymorphism
1048988
A
R
209
P
4
UniProt
VAR_050522
R
263
H
PPB1_HUMAN
Polymorphism
2853378
A
R
241
H
5
UniProt
VAR_050523
E
451
G
PPB1_HUMAN
Polymorphism
1048994
A
E
429
G
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: ALKALINE_PHOSPHATASE (A:89-97)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ALKALINE_PHOSPHATASE
PS00123
Alkaline phosphatase active site.
PPB1_HUMAN
111-119
1
A:89-97
[
close PROSITE info
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Exons
(11, 11)
Info
All Exons
Exon 1.1a (A:1-4)
Exon 1.2 (A:4-43)
Exon 1.3 (A:43-81)
Exon 1.4a (A:82-140)
Exon 1.4c (A:140-197)
Exon 1.5 (A:198-242)
Exon 1.6 (A:243-267)
Exon 1.7 (A:267-312)
Exon 1.8 (A:312-376)
Exon 1.9b (A:376-415)
Exon 1.10b (A:415-923 (gaps))
View:
Select:
Label:
All Exon Boundaries
01: Boundary -/1.1a
02: Boundary 1.1a/1.2
03: Boundary 1.2/1.3
04: Boundary 1.3/1.4a
05: Boundary 1.4a/1.4c
06: Boundary 1.4c/1.5
07: Boundary 1.5/1.6
08: Boundary 1.6/1.7
09: Boundary 1.7/1.8
10: Boundary 1.8/1.9b
11: Boundary 1.9b/1.10b
12: Boundary 1.10b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000392027
1a
ENSE00001510465
chr2:
233243244-233243588
345
PPB1_HUMAN
1-26
26
1
A:1-4
4
1.2
ENST00000392027
2
ENSE00001789454
chr2:
233243681-233243797
117
PPB1_HUMAN
26-65
40
1
A:4-43
40
1.3
ENST00000392027
3
ENSE00001730171
chr2:
233243910-233244025
116
PPB1_HUMAN
65-103
39
1
A:43-81
39
1.4a
ENST00000392027
4a
ENSE00001645266
chr2:
233244223-233244397
175
PPB1_HUMAN
104-162
59
1
A:82-140
59
1.4c
ENST00000392027
4c
ENSE00001620414
chr2:
233244474-233244646
173
PPB1_HUMAN
162-219
58
1
A:140-197
58
1.5
ENST00000392027
5
ENSE00001765153
chr2:
233244896-233245030
135
PPB1_HUMAN
220-264
45
1
A:198-242
45
1.6
ENST00000392027
6
ENSE00001641289
chr2:
233245130-233245202
73
PPB1_HUMAN
265-289
25
1
A:243-267
25
1.7
ENST00000392027
7
ENSE00001723793
chr2:
233245333-233245467
135
PPB1_HUMAN
289-334
46
1
A:267-312
46
1.8
ENST00000392027
8
ENSE00001789464
chr2:
233245550-233245741
192
PPB1_HUMAN
334-398
65
1
A:312-376
65
1.9b
ENST00000392027
9b
ENSE00001737846
chr2:
233245961-233246077
117
PPB1_HUMAN
398-437
40
1
A:376-415
40
1.10b
ENST00000392027
10b
ENSE00001510464
chr2:
233246207-233247599
1393
PPB1_HUMAN
437-535
99
1
A:415-923 (gaps)
93
[
close EXON info
]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3mk2a_ (A:)
View:
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Classes
(
)
(
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Folds
(
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(
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Superfamilies
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(
)
Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Alkaline phosphatase-like
(78)
Superfamily
:
Alkaline phosphatase-like
(78)
Family
:
Alkaline phosphatase
(56)
Protein domain
:
automated matches
(9)
Human (Homo sapiens) [TaxId: 9606]
(7)
1a
d3mk2a_
A:
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Alk_phosphatase_3mk2A01 (A:33-468)
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Clans
(
)
(
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Families
(
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(
)
Organisms
(
)
(
)
Clan
:
Alk_phosphatase
(47)
Family
:
Alk_phosphatase
(22)
Homo sapiens (Human)
(6)
1a
Alk_phosphatase-3mk2A01
A:33-468
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Chain A
Asymmetric Unit 1
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