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3MJY
Asym. Unit
Info
Asym.Unit (114 KB)
Biol.Unit 1 (109 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF DIHYDROOROTATE DEHYDROGENASE FROM LEISHMANIA MAJOR IN COMPLEX WITH 5-AMINOOROTIC ACID
Authors
:
M. P. Pinheiro, J. R. Rocha, J. Cheleski, C. A. Montanari, M. C. Nonato
Date
:
13 Apr 10 (Deposition) - 23 Feb 11 (Release) - 23 Feb 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.96
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Dihydroorotate Dehydrogenase, Pyrd, Oxidoreductase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
J. Cheleski, J. R. Rocha, M. P. Pinheiro, H. J. Wiggers, A. B. Da Silva, M. C. Nonato, C. A. Montanari
Novel Insights For Dihydroorotate Dehydrogenase Class 1A Inhibitors Discovery.
Eur. J. Med. Chem. V. 45 5899 2010
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Hetero Components
(4, 10)
Info
All Hetero Components
1a: FLAVIN MONONUCLEOTIDE (FMNa)
1b: FLAVIN MONONUCLEOTIDE (FMNb)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
3a: 5-AMINO-2,6-DIOXO-1,2,3,6-TETRAHYD... (IJZa)
3b: 5-AMINO-2,6-DIOXO-1,2,3,6-TETRAHYD... (IJZb)
4a: SULFATE ION (SO4a)
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Label:
No.
Name
Count
Type
Full Name
1
FMN
2
Ligand/Ion
FLAVIN MONONUCLEOTIDE
2
GOL
5
Ligand/Ion
GLYCEROL
3
IJZ
2
Ligand/Ion
5-AMINO-2,6-DIOXO-1,2,3,6-TETRAHYDROPYRIMIDINE-4-CARBOXYLIC ACID
4
SO4
1
Ligand/Ion
SULFATE ION
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ALA A:19 , ALA A:20 , GLY A:21 , LYS A:44 , SER A:45 , TYR A:59 , ASN A:68 , MET A:70 , ASN A:128 , LYS A:165 , ILE A:194 , ASN A:195 , GLY A:222 , GLY A:223 , VAL A:226 , CYS A:249 , GLY A:250 , GLY A:251 , GLY A:272 , THR A:273 , IJZ A:314 , HOH A:337 , HOH A:341 , HOH A:393 , HOH A:470
BINDING SITE FOR RESIDUE FMN A 313
02
AC2
SOFTWARE
LYS A:44 , ASN A:68 , MET A:70 , GLY A:71 , LEU A:72 , ASN A:128 , ASN A:195 , SER A:196 , FMN A:313
BINDING SITE FOR RESIDUE IJZ A 314
03
AC3
SOFTWARE
ALA B:19 , ALA B:20 , GLY B:21 , LYS B:44 , SER B:45 , TYR B:59 , ASN B:68 , MET B:70 , ASN B:128 , LYS B:165 , ILE B:194 , ASN B:195 , GLY B:222 , GLY B:223 , VAL B:226 , CYS B:249 , GLY B:250 , GLY B:251 , GLY B:272 , THR B:273 , IJZ B:314 , HOH B:348 , HOH B:379 , HOH B:434
BINDING SITE FOR RESIDUE FMN B 313
04
AC4
SOFTWARE
LYS B:44 , ASN B:68 , MET B:70 , GLY B:71 , LEU B:72 , ASN B:128 , ASN B:195 , SER B:196 , FMN B:313 , HOH B:363 , HOH B:457
BINDING SITE FOR RESIDUE IJZ B 314
05
AC5
SOFTWARE
LEU A:231 , VAL B:202 , ILE B:203 , HOH B:444 , HOH B:534
BINDING SITE FOR RESIDUE GOL B 315
06
AC6
SOFTWARE
VAL A:202 , ILE A:203 , HOH A:438 , HOH A:492 , LEU B:231 , LEU B:260
BINDING SITE FOR RESIDUE GOL A 315
07
AC7
SOFTWARE
ASP A:171 , PHE A:172 , ALA A:173 , ASN B:199 , LYS B:215
BINDING SITE FOR RESIDUE GOL A 316
08
AC8
SOFTWARE
ASN A:199 , LYS A:215 , ASP B:171 , PHE B:172 , HOH B:400
BINDING SITE FOR RESIDUE GOL B 316
09
AC9
SOFTWARE
GLU A:206 , THR A:207 , GLU A:208 , GLU B:206 , THR B:207 , GLU B:208 , ARG B:310 , HOH B:487 , HOH B:522
BINDING SITE FOR RESIDUE GOL A 317
10
BC1
SOFTWARE
HIS A:160 , SER A:161 , HOH A:536 , HOH A:537
BINDING SITE FOR RESIDUE SO4 A 318
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3mjya_ (A:)
1b: SCOP_d3mjyb_ (B:)
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Protein Domains
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Organisms
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)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
FMN-linked oxidoreductases
(290)
Family
:
FMN-linked oxidoreductases
(242)
Protein domain
:
automated matches
(40)
Leishmania major [TaxId: 5664]
(6)
1a
d3mjya_
A:
1b
d3mjyb_
B:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_DHO_dh_3mjyB01 (B:2-294)
1b: PFAM_DHO_dh_3mjyB02 (B:2-294)
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Clan
:
TIM_barrel
(694)
Family
:
DHO_dh
(22)
Leishmania major
(2)
1a
DHO_dh-3mjyB01
B:2-294
1b
DHO_dh-3mjyB02
B:2-294
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Asymmetric Unit 1
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