PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
3MHX
Asym. Unit
Info
Asym.Unit (36 KB)
Biol.Unit 1 (31 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF STENOTROPHOMONAS MALTOPHILIA FEOA COMPLEXED WITH ZINC: A UNIQUE PROCARYOTIC SH3 DOMAIN PROTEIN POSSIBLY ACTING AS A BACTERIAL FERROUS IRON TRANSPORT ACTIVATING FACTOR
Authors
:
S. -H. Chou, Y. -C. Su, K. -H. Chin, H. -C. Hung, G. -H. Shen, A. H. -J. Wang
Date
:
09 Apr 10 (Deposition) - 23 Jun 10 (Release) - 23 Jun 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Feoa, Ferrous Iron Transport, Zinc Binding, Prokaryotic Sh3 Domain, Stenotrophomonus Maltophilia, Metal Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. -C. Su, K. -H. Chin, H. -C. Hung, G. -H. Shen, A. H. -J. Wang, S. -H. Chou
Structure Of Stenotrophomonas Maltophilia Feoa Complexed With Zinc: A Unique Prokaryotic Sh3-Domain Protein That Possibly Acts As A Bacterial Ferrous Iron-Transport Activating Factor
Acta Crystallogr. , Sect. F V. 66 636 2010
[
close entry info
]
Hetero Components
(3, 10)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
2e: CHLORIDE ION (CLe)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
3c: ZINC ION (ZNc)
3d: ZINC ION (ZNd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
1
Ligand/Ion
ACETATE ION
2
CL
5
Ligand/Ion
CHLORIDE ION
3
ZN
4
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:5 , GLU B:32
BINDING SITE FOR RESIDUE ZN A 2002
02
AC2
SOFTWARE
HIS A:21 , ASP A:24 , ALA A:25 , ILE A:26 , ZN A:2008 , GLU B:52
BINDING SITE FOR RESIDUE CL A 2005
03
AC3
SOFTWARE
GLU A:52 , HIS B:21 , CL B:2001 , CL B:2006
BINDING SITE FOR RESIDUE ZN A 2007
04
AC4
SOFTWARE
HIS A:21 , CL A:2005 , GLU B:52 , CL B:2004
BINDING SITE FOR RESIDUE ZN A 2008
05
AC5
SOFTWARE
HOH A:115 , HOH A:185 , HIS B:9 , ALA B:84
BINDING SITE FOR RESIDUE ZN A 2009
06
AC6
SOFTWARE
GLU A:52 , SER A:68 , ZN A:2007 , HIS B:21 , ARG B:72
BINDING SITE FOR RESIDUE CL B 2001
07
AC7
SOFTWARE
ARG A:66 , SER A:68 , ILE B:26 , SER B:68 , ARG B:72
BINDING SITE FOR RESIDUE CL B 2003
08
AC8
SOFTWARE
HIS A:21 , ARG A:72 , ZN A:2008 , GLU B:52 , SER B:68
BINDING SITE FOR RESIDUE CL B 2004
09
AC9
SOFTWARE
GLU A:52 , ZN A:2007 , HIS B:21 , ASP B:24 , ALA B:25 , ILE B:26
BINDING SITE FOR RESIDUE CL B 2006
10
BC1
SOFTWARE
HIS B:9 , ARG B:29 , ALA B:84
BINDING SITE FOR RESIDUE ACT B 1002
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_FeoA_3mhxB01 (B:1-77)
1b: PFAM_FeoA_3mhxB02 (B:1-77)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
TRB
(15)
Family
:
FeoA
(11)
Stenotrophomonas maltophilia (strain K279a)
(1)
1a
FeoA-3mhxB01
B:1-77
1b
FeoA-3mhxB02
B:1-77
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (36 KB)
Header - Asym.Unit
Biol.Unit 1 (31 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
3MHX
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
