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3MHH
Asym. Unit
Info
Asym.Unit (264 KB)
Biol.Unit 1 (257 KB)
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(1)
Title
:
STRUCTURE OF THE SAGA UBP8/SGF11/SUS1/SGF73 DUB MODULE
Authors
:
N. L. Samara, A. B. Datta, C. E. Berndsen, X. Zhang, T. Yao, R. E. Cohen, C.
Date
:
08 Apr 10 (Deposition) - 21 Apr 10 (Release) - 09 Jun 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.45
Chains
:
Asym. Unit : A,B,C,E
Biol. Unit 1: A,B,C,E (1x)
Keywords
:
Multi-Protein Complex, Hydrolase-Transcription Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. L. Samara, A. B. Datta, C. E. Berndsen, X. Zhang, T. Yao, R. E. Cohen, C. Wolberger
Structural Insights Into The Assembly And Function Of The Saga Deubiquitinating Module.
Science V. 328 1025 2010
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Hetero Components
(1, 7)
Info
All Hetero Components
1a: ZINC ION (ZNa)
1b: ZINC ION (ZNb)
1c: ZINC ION (ZNc)
1d: ZINC ION (ZNd)
1e: ZINC ION (ZNe)
1f: ZINC ION (ZNf)
1g: ZINC ION (ZNg)
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No.
Name
Count
Type
Full Name
1
ZN
7
Ligand/Ion
ZINC ION
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:4 , HIS A:6 , CYS A:96 , CYS A:99
BINDING SITE FOR RESIDUE ZN A 472
2
AC2
SOFTWARE
CYS A:46 , CYS A:49 , CYS A:68 , HIS A:73
BINDING SITE FOR RESIDUE ZN A 473
3
AC3
SOFTWARE
CYS A:60 , CYS A:63 , HIS A:77 , HIS A:83
BINDING SITE FOR RESIDUE ZN A 474
4
AC4
SOFTWARE
HIS A:170 , CYS A:174 , CYS A:182 , CYS A:185
BINDING SITE FOR RESIDUE ZN A 475
5
AC5
SOFTWARE
HIS A:250 , CYS A:271 , CYS A:273 , HIS A:276
BINDING SITE FOR RESIDUE ZN A 476
6
AC6
SOFTWARE
CYS C:73 , CYS C:76 , HIS C:88 , CYS C:92
BINDING SITE FOR RESIDUE ZN C 100
7
AC7
SOFTWARE
CYS E:78 , CYS E:81 , HIS E:93 , HOH E:163
BINDING SITE FOR RESIDUE ZN E 97
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(4, 4)
Info
All PROSITE Patterns/Profiles
1: ZF_UBP (A:44-105)
2: USP_3 (A:137-468)
3: USP_1 (A:138-153)
4: USP_2 (A:411-428)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZF_UBP
PS50271
Zinc finger UBP-type profile.
UBP8_YEAST
44-105
1
A:44-105
2
USP_3
PS50235
Ubiquitin specific protease (USP) domain profile.
UBP8_YEAST
137-468
1
A:137-468
3
USP_1
PS00972
Ubiquitin specific protease (USP) domain signature 1.
UBP8_YEAST
138-153
1
A:138-153
4
USP_2
PS00973
Ubiquitin specific protease (USP) domain signature 2.
UBP8_YEAST
411-428
1
A:411-428
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
(4, 4)
Info
all PFAM domains
1a: PFAM_UCH_3mhhA01 (A:134-465)
2a: PFAM_zf_UBP_3mhhA02 (A:46-108)
3a: PFAM_EnY2_3mhhB01 (B:7-90)
4a: PFAM_Sgf11_3mhhC01 (C:67-95)
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Clans
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(
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Organisms
(
)
(
)
Clan
:
Peptidase_CA
(169)
Family
:
UCH
(11)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(3)
1a
UCH-3mhhA01
A:134-465
Clan
:
RING
(39)
Family
:
zf-UBP
(4)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(2)
2a
zf-UBP-3mhhA02
A:46-108
Clan
:
no clan defined [family: EnY2]
(4)
Family
:
EnY2
(4)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(4)
3a
EnY2-3mhhB01
B:7-90
Clan
:
no clan defined [family: Sgf11]
(2)
Family
:
Sgf11
(2)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(2)
4a
Sgf11-3mhhC01
C:67-95
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Asym.Unit (264 KB)
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