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3MG1
Biol. Unit 2
Info
Asym.Unit (221 KB)
Biol.Unit 1 (215 KB)
Biol.Unit 2 (110 KB)
Biol.Unit 3 (109 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE ORANGE CAROTENOID PROTEIN FROM CYANOBACTERIA SYNECHOCYSTIS SP. PCC 6803
Authors
:
A. Wilson, J. Kinney, P. H. Zwart, C. Punginelli, S. D'Haen, F. Perreau, M. G. Klein, D. Kirilovsky, C. A. Kerfeld
Date
:
05 Apr 10 (Deposition) - 14 Apr 10 (Release) - 11 Aug 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.65
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A (1x)
Biol. Unit 3: B (1x)
Keywords
:
Carotenoid Binding Protein, Echinone, Phycobilisome
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Wilson, J. N. Kinney, P. H. Zwart, C. Punginelli, S. D'Haene, F. Perreau, M. G. Klein, D. Kirilovsky, C. A. Kerfeld
Structural Determinants Underlying Photoprotection In The Photoactive Orange Carotenoid Protein Of Cyanobacteria.
J. Biol. Chem. V. 285 18364 2010
(for further references see the
PDB file header
)
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: BETA,BETA-CAROTEN-4-ONE (ECHa)
1b: BETA,BETA-CAROTEN-4-ONE (ECHb)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
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No.
Name
Count
Type
Full Name
1
ECH
1
Ligand/Ion
BETA,BETA-CAROTEN-4-ONE
2
GOL
1
Ligand/Ion
GLYCEROL
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ALA A:55 , PRO A:56 , GLY A:57 , GLU A:174 , PRO A:276 , TRP A:277 , HOH A:1025 , HOH A:1165 , HOH A:1231 , HOH A:1275
BINDING SITE FOR RESIDUE GOL A 324
2
AC2
SOFTWARE
ILE A:40 , TYR A:44 , TRP A:110 , TYR A:111 , GLY A:114 , ILE A:151 , THR A:152 , ARG A:155 , VAL A:158 , TYR A:201 , LEU A:205 , CYS A:245 , VAL A:273 , THR A:275 , TRP A:277 , MET A:284 , TRP A:288 , ILE A:303
BINDING SITE FOR RESIDUE ECH A 351
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: OCP_N (A:18-163)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
OCP_N
PS51773
Orange carotenoid protein (OCP) N-terminal domain profile.
OCP_SYNY3
18-169
1
A:18-163
-
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d3mg1a1 (A:3-173)
1b: SCOP_d3mg1b1 (B:3-173)
2a: SCOP_d3mg1a2 (A:174-311)
2b: SCOP_d3mg1b2 (B:174-312)
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Protein Domains
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(
)
Organisms
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(
)
Class
:
All alpha proteins
(14657)
Fold
:
Orange carotenoid protein, N-terminal domain
(4)
Superfamily
:
Orange carotenoid protein, N-terminal domain
(4)
Family
:
Orange carotenoid protein, N-terminal domain
(4)
Protein domain
:
automated matches
(3)
Synechocystis sp. [TaxId: 1148]
(3)
1a
d3mg1a1
A:3-173
1b
d3mg1b1
B:3-173
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Cystatin-like
(403)
Superfamily
:
NTF2-like
(231)
Family
:
automated matches
(27)
Protein domain
:
automated matches
(27)
Synechocystis sp. [TaxId: 1148]
(3)
2a
d3mg1a2
A:174-311
2b
d3mg1b2
B:174-312
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CATH Domains
(0, 0 ; only for superseded entry 3I1V: 2,4)
Info
all CATH domains
1a: CATH_3i1vB02 ()
1b: CATH_3i1vA02 ()
2a: CATH_3i1vB01 ()
2b: CATH_3i1vA01 ()
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_NTF2_3mg1B01 (B:193-308)
1b: PFAM_NTF2_3mg1B02 (B:193-308)
2a: PFAM_Carot_N_3mg1B03 (B:4-164)
2b: PFAM_Carot_N_3mg1B04 (B:4-164)
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Clans
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(
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Families
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(
)
Organisms
(
)
(
)
Clan
:
NTF2
(66)
Family
:
NTF2
(30)
Synechocystis sp. (strain ATCC 27184 / PCC 6803 / N-1)
(3)
1a
NTF2-3mg1B01
B:193-308
1b
NTF2-3mg1B02
B:193-308
Clan
:
no clan defined [family: Carot_N]
(3)
Family
:
Carot_N
(3)
Synechocystis sp. (strain ATCC 27184 / PCC 6803 / N-1)
(3)
2a
Carot_N-3mg1B03
B:4-164
2b
Carot_N-3mg1B04
B:4-164
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Chain A
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (221 KB)
Header - Asym.Unit
Biol.Unit 1 (215 KB)
Header - Biol.Unit 1
Biol.Unit 2 (110 KB)
Header - Biol.Unit 2
Biol.Unit 3 (109 KB)
Header - Biol.Unit 3
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