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3MG1
Asym. Unit
Info
Asym.Unit (221 KB)
Biol.Unit 1 (215 KB)
Biol.Unit 2 (110 KB)
Biol.Unit 3 (109 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE ORANGE CAROTENOID PROTEIN FROM CYANOBACTERIA SYNECHOCYSTIS SP. PCC 6803
Authors
:
A. Wilson, J. Kinney, P. H. Zwart, C. Punginelli, S. D'Haen, F. Perreau, M. G. Klein, D. Kirilovsky, C. A. Kerfeld
Date
:
05 Apr 10 (Deposition) - 14 Apr 10 (Release) - 11 Aug 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.65
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A (1x)
Biol. Unit 3: B (1x)
Keywords
:
Carotenoid Binding Protein, Echinone, Phycobilisome
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
A. Wilson, J. N. Kinney, P. H. Zwart, C. Punginelli, S. D'Haene, F. Perreau, M. G. Klein, D. Kirilovsky, C. A. Kerfeld
Structural Determinants Underlying Photoprotection In The Photoactive Orange Carotenoid Protein Of Cyanobacteria.
J. Biol. Chem. V. 285 18364 2010
(for further references see the
PDB file header
)
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: BETA,BETA-CAROTEN-4-ONE (ECHa)
1b: BETA,BETA-CAROTEN-4-ONE (ECHb)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
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No.
Name
Count
Type
Full Name
1
ECH
2
Ligand/Ion
BETA,BETA-CAROTEN-4-ONE
2
GOL
2
Ligand/Ion
GLYCEROL
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ALA A:55 , PRO A:56 , GLY A:57 , GLU A:174 , PRO A:276 , TRP A:277 , HOH A:1025 , HOH A:1165 , HOH A:1231 , HOH A:1275
BINDING SITE FOR RESIDUE GOL A 324
2
AC2
SOFTWARE
ILE A:40 , TYR A:44 , TRP A:110 , TYR A:111 , GLY A:114 , ILE A:151 , THR A:152 , ARG A:155 , VAL A:158 , TYR A:201 , LEU A:205 , CYS A:245 , VAL A:273 , THR A:275 , TRP A:277 , MET A:284 , TRP A:288 , ILE A:303
BINDING SITE FOR RESIDUE ECH A 351
3
AC3
SOFTWARE
ALA B:55 , PRO B:56 , GLY B:57 , SER B:60 , GLU B:174 , PRO B:276 , TRP B:277 , HOH B:1040 , HOH B:1230 , HOH B:1270 , HOH B:1666
BINDING SITE FOR RESIDUE GOL B 324
4
AC4
SOFTWARE
ILE B:40 , TYR B:44 , TRP B:110 , TYR B:111 , GLY B:114 , ILE B:151 , THR B:152 , ARG B:155 , VAL B:158 , TYR B:201 , LEU B:205 , CYS B:245 , VAL B:273 , THR B:275 , TRP B:277 , MET B:284 , TRP B:288 , ILE B:303
BINDING SITE FOR RESIDUE ECH B 351
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: OCP_N (A:18-163,B:18-164)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
OCP_N
PS51773
Orange carotenoid protein (OCP) N-terminal domain profile.
OCP_SYNY3
18-169
2
A:18-163
B:18-164
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d3mg1a1 (A:3-173)
1b: SCOP_d3mg1b1 (B:3-173)
2a: SCOP_d3mg1a2 (A:174-311)
2b: SCOP_d3mg1b2 (B:174-312)
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Protein Domains
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(
)
Class
:
All alpha proteins
(14657)
Fold
:
Orange carotenoid protein, N-terminal domain
(4)
Superfamily
:
Orange carotenoid protein, N-terminal domain
(4)
Family
:
Orange carotenoid protein, N-terminal domain
(4)
Protein domain
:
automated matches
(3)
Synechocystis sp. [TaxId: 1148]
(3)
1a
d3mg1a1
A:3-173
1b
d3mg1b1
B:3-173
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Cystatin-like
(403)
Superfamily
:
NTF2-like
(231)
Family
:
automated matches
(27)
Protein domain
:
automated matches
(27)
Synechocystis sp. [TaxId: 1148]
(3)
2a
d3mg1a2
A:174-311
2b
d3mg1b2
B:174-312
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CATH Domains
(0, 0 ; only for superseded entry 3I1V: 2,4)
Info
all CATH domains
1a: CATH_3i1vB02 ()
1b: CATH_3i1vA02 ()
2a: CATH_3i1vB01 ()
2b: CATH_3i1vA01 ()
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_NTF2_3mg1B01 (B:193-308)
1b: PFAM_NTF2_3mg1B02 (B:193-308)
2a: PFAM_Carot_N_3mg1B03 (B:4-164)
2b: PFAM_Carot_N_3mg1B04 (B:4-164)
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Clans
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(
)
Organisms
(
)
(
)
Clan
:
NTF2
(66)
Family
:
NTF2
(30)
Synechocystis sp. (strain ATCC 27184 / PCC 6803 / N-1)
(3)
1a
NTF2-3mg1B01
B:193-308
1b
NTF2-3mg1B02
B:193-308
Clan
:
no clan defined [family: Carot_N]
(3)
Family
:
Carot_N
(3)
Synechocystis sp. (strain ATCC 27184 / PCC 6803 / N-1)
(3)
2a
Carot_N-3mg1B03
B:4-164
2b
Carot_N-3mg1B04
B:4-164
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Asymmetric Unit 1
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Asym.Unit (221 KB)
Header - Asym.Unit
Biol.Unit 1 (215 KB)
Header - Biol.Unit 1
Biol.Unit 2 (110 KB)
Header - Biol.Unit 2
Biol.Unit 3 (109 KB)
Header - Biol.Unit 3
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