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3MFV
Biol. Unit 2
Info
Asym.Unit (109 KB)
Biol.Unit 1 (155 KB)
Biol.Unit 2 (154 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN ARGINASE I IN COMPLEX WITH 2-AMINOHOMOHISTIDINE
Authors
:
L. Di Costanzo, D. W. Christianson
Date
:
04 Apr 10 (Deposition) - 05 May 10 (Release) - 20 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (3x)
Biol. Unit 2: B (3x)
Keywords
:
Manganese Coordination, Structure Based Design, Inhibition, Hydrolase, Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Ilies, L. Di Costanzo, M. L. North, J. A. Scott, D. W. Christianson
2-Aminoimidazole Amino Acids As Inhibitors Of The Binuclear Manganese Metalloenzyme Human Arginase I.
J. Med. Chem. V. 53 4266 2010
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Hetero Components
(1, 3)
Info
All Hetero Components
1a: MANGANESE (II) ION (MNa)
1b: MANGANESE (II) ION (MNb)
1c: MANGANESE (II) ION (MNc)
1d: MANGANESE (II) ION (MNd)
2a: (2S)-2-AMINO-4-(2-AMINO-1H-IMIDAZO... (Z70a)
2b: (2S)-2-AMINO-4-(2-AMINO-1H-IMIDAZO... (Z70b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MN
-1
Ligand/Ion
MANGANESE (II) ION
2
Z70
3
Ligand/Ion
(2S)-2-AMINO-4-(2-AMINO-1H-IMIDAZOL-5-YL)BUTANOIC ACID
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Sites
(3, 3)
Info
All Sites
1: AC4 (SOFTWARE)
2: AC5 (SOFTWARE)
3: AC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC4
SOFTWARE
ASP B:124 , HIS B:126 , ASP B:232 , ASP B:234 , Z70 B:323 , MN B:615
BINDING SITE FOR RESIDUE MN B 614
2
AC5
SOFTWARE
HIS B:101 , ASP B:124 , ASP B:128 , ASP B:232 , Z70 B:323 , MN B:614
BINDING SITE FOR RESIDUE MN B 615
3
AC6
SOFTWARE
HIS B:126 , ASP B:128 , ASN B:130 , SER B:137 , HIS B:141 , GLY B:142 , ASP B:183 , GLU B:186 , ASP B:232 , ASP B:234 , THR B:246 , GLU B:277 , HOH B:342 , HOH B:356 , MN B:614 , MN B:615
BINDING SITE FOR RESIDUE Z70 B 323
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SAPs(SNPs)/Variants
(10, 30)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_015594 (I11T, chain B, )
02: VAR_072164 (G27D, chain B, )
03: VAR_072165 (G74V, chain B, )
04: VAR_072166 (A125V, chain B, )
05: VAR_072167 (T134I, chain B, )
06: VAR_015595 (G138V, chain B, )
07: VAR_072168 (R180T, chain B, )
08: VAR_000674 (G235R, chain B, )
09: VAR_000675 (T290S, chain B, )
10: VAR_072169 (R308Q, chain B, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_015594
I
11
T
ARGI1_HUMAN
Disease (ARGIN)
28941474
B
I
11
T
02
UniProt
VAR_072164
G
27
D
ARGI1_HUMAN
Disease (ARGIN)
---
B
G
27
D
03
UniProt
VAR_072165
G
74
V
ARGI1_HUMAN
Disease (ARGIN)
---
B
G
74
V
04
UniProt
VAR_072166
A
125
V
ARGI1_HUMAN
Disease (ARGIN)
---
B
A
125
V
05
UniProt
VAR_072167
T
134
I
ARGI1_HUMAN
Disease (ARGIN)
---
B
T
134
I
06
UniProt
VAR_015595
G
138
V
ARGI1_HUMAN
Disease (ARGIN)
---
B
G
138
V
07
UniProt
VAR_072168
R
180
T
ARGI1_HUMAN
Disease (ARGIN)
---
B
R
180
T
08
UniProt
VAR_000674
G
235
R
ARGI1_HUMAN
Disease (ARGIN)
---
B
G
235
R
09
UniProt
VAR_000675
T
290
S
ARGI1_HUMAN
Polymorphism
---
B
T
290
S
10
UniProt
VAR_072169
R
308
Q
ARGI1_HUMAN
Disease (ARGIN)
---
B
R
308
Q
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 3)
Info
All PROSITE Patterns/Profiles
1: ARGINASE_1 (B:230-251)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ARGINASE_1
PS01053
Arginase family signature.
ARGI1_HUMAN
230-251
3
-
B:230-251
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Exons
(0, 0)
Info
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3mfva_ (A:)
1b: SCOP_d3mfvb_ (B:)
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)
Protein Domains
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Organisms
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)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Arginase/deacetylase
(138)
Superfamily
:
Arginase/deacetylase
(138)
Family
:
Arginase-like amidino hydrolases
(97)
Protein domain
:
Arginase
(73)
Human (Homo sapiens) [TaxId: 9606]
(26)
1a
d3mfva_
A:
1b
d3mfvb_
B:
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Arginase_3mfvB01 (B:6-305)
1b: PFAM_Arginase_3mfvB02 (B:6-305)
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Clan
:
Arginase
(56)
Family
:
Arginase
(37)
Homo sapiens (Human)
(11)
1a
Arginase-3mfvB01
B:6-305
1b
Arginase-3mfvB02
B:6-305
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