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3MEL
Biol. Unit 1
Info
Asym.Unit (147 KB)
Biol.Unit 1 (72 KB)
Biol.Unit 2 (72 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THIAMIN PYROPHOSPHOKINASE FAMILY PROTEIN FROM ENTEROCOCCUS FAECALIS, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET EFR150
Authors
:
A. Kuzin, M. Abasidze, J. Seetharaman, M. Mao, R. Xiao, C. Ciccosanti, E M. Maglaqui, L. Zhao, J. K. Everett, R. Nair, T. B. Acton, B. Rost, G. T. Montelione, J. F. Hunt, L. Tong, Northeast Structural Genomic Consortium (Nesg)
Date
:
31 Mar 10 (Deposition) - 05 May 10 (Release) - 05 May 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.79
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Structural Genomics, Psi-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Unknown Function
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Kuzin, M. Abasidze, J. Seetharaman, M. Mao, R. Xiao, C. Ciccosanti, E. L. Foote, M. Maglaqui, L. Zhao, J. K. Everett, R. Nair, T. B. Acton, B. Rost, G. T. Montelione, J. F. Hunt, L. Tong
Northeast Structural Genomics Consortium Target Efr150
To Be Published
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Hetero Components
(3, 6)
Info
All Hetero Components
1a: MAGNESIUM ION (MGa)
1b: MAGNESIUM ION (MGb)
1c: MAGNESIUM ION (MGc)
1d: MAGNESIUM ION (MGd)
1e: MAGNESIUM ION (MGe)
1f: MAGNESIUM ION (MGf)
1g: MAGNESIUM ION (MGg)
1h: MAGNESIUM ION (MGh)
1i: MAGNESIUM ION (MGi)
1j: MAGNESIUM ION (MGj)
1k: MAGNESIUM ION (MGk)
2a: SELENOMETHIONINE (MSEa)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
2i: SELENOMETHIONINE (MSEi)
3a: PHOSPHATE ION (PO4a)
3b: PHOSPHATE ION (PO4b)
4a: THIAMINE DIPHOSPHATE (TPPa)
4b: THIAMINE DIPHOSPHATE (TPPb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
MG
-1
Ligand/Ion
MAGNESIUM ION
2
MSE
4
Mod. Amino Acid
SELENOMETHIONINE
3
PO4
1
Ligand/Ion
PHOSPHATE ION
4
TPP
1
Ligand/Ion
THIAMINE DIPHOSPHATE
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC3 (SOFTWARE)
03: AC4 (SOFTWARE)
04: AC6 (SOFTWARE)
05: AC7 (SOFTWARE)
06: AC9 (SOFTWARE)
07: BC1 (SOFTWARE)
08: BC2 (SOFTWARE)
09: BC3 (SOFTWARE)
10: BC4 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:75 , ASP A:76 , THR A:78 , ASP A:79 , THR A:80 , HIS A:108 , MG A:223 , TYR B:174 , LEU B:176 , TYR B:187 , SER B:189 , ASN B:190
BINDING SITE FOR RESIDUE TPP A 902
02
AC3
SOFTWARE
ARG B:55 , GLY C:9 , ASP C:30 , ARG C:31 , SER C:52 , HOH C:226
BINDING SITE FOR RESIDUE PO4 C 223
03
AC4
SOFTWARE
GLY B:9 , ASP B:30 , ARG B:31 , SER B:52
BINDING SITE FOR RESIDUE PO4 B 223
04
AC6
SOFTWARE
ASP A:30 , ASP A:49 , ASP A:51 , ASP A:79 , TPP A:902
BINDING SITE FOR RESIDUE MG A 223
05
AC7
SOFTWARE
ASP B:30 , ASP B:49 , ASP B:51 , ASP B:79
BINDING SITE FOR RESIDUE MG B 224
06
AC9
SOFTWARE
MG B:225 , ASP C:51
BINDING SITE FOR RESIDUE MG C 225
07
BC1
SOFTWARE
PHE B:50 , LEU B:53 , TYR B:58 , MG C:225
BINDING SITE FOR RESIDUE MG B 225
08
BC2
SOFTWARE
HIS A:59
BINDING SITE FOR RESIDUE MG A 224
09
BC3
SOFTWARE
ASN A:166 , SER A:200
BINDING SITE FOR RESIDUE MG A 225
10
BC4
SOFTWARE
ASP A:76
BINDING SITE FOR RESIDUE MG A 226
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(0, 0)
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CATH Domains
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all CATH domains
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Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_TPK_B1_binding_3melD01 (D:143-207)
1b: PFAM_TPK_B1_binding_3melD02 (D:143-207)
1c: PFAM_TPK_B1_binding_3melD03 (D:143-207)
1d: PFAM_TPK_B1_binding_3melD04 (D:143-207)
2a: PFAM_TPK_catalytic_3melD05 (D:12-132)
2b: PFAM_TPK_catalytic_3melD06 (D:12-132)
2c: PFAM_TPK_catalytic_3melD07 (D:12-132)
2d: PFAM_TPK_catalytic_3melD08 (D:12-132)
View:
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: TPK_B1_binding]
(4)
Family
:
TPK_B1_binding
(4)
Enterococcus faecalis (Streptococcus faecalis)
(1)
1a
TPK_B1_binding-3melD01
D:143-207
1b
TPK_B1_binding-3melD02
D:143-207
1c
TPK_B1_binding-3melD03
D:143-207
1d
TPK_B1_binding-3melD04
D:143-207
Clan
:
no clan defined [family: TPK_catalytic]
(4)
Family
:
TPK_catalytic
(4)
Enterococcus faecalis (Streptococcus faecalis)
(1)
2a
TPK_catalytic-3melD05
D:12-132
2b
TPK_catalytic-3melD06
D:12-132
2c
TPK_catalytic-3melD07
D:12-132
2d
TPK_catalytic-3melD08
D:12-132
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Asymmetric Unit 1
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