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3ME4
Asym. Unit
Info
Asym.Unit (120 KB)
Biol.Unit 1 (112 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF MOUSE RANK
Authors
:
S. W. Walter, C. Liu, X. Zhu, Y. Wu, R. J. Owens, D. I. Stuart, B. Gao, J. Ren
Date
:
31 Mar 10 (Deposition) - 02 Jun 10 (Release) - 02 Jun 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.01
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Rank, Rankl, Rankl-Rank Complex, Tnfsf11, Tnfrsf11A, Tnf Superfamily, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Liu, T. S. Walter, P. Huang, S. Zhang, X. Zhu, Y. Wu, L. R. Wedderburn, P. Tang, R. J. Owens, D. I. Stuart, J. Ren, B. Gao
Structural And Functional Insights Of Rankl-Rank Interaction And Signaling.
J. Immunol. 2010
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Hetero Components
(5, 13)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
4a: SODIUM ION (NAa)
4b: SODIUM ION (NAb)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ACT
2
Ligand/Ion
ACETATE ION
2
CL
3
Ligand/Ion
CHLORIDE ION
3
GOL
4
Ligand/Ion
GLYCEROL
4
NA
2
Ligand/Ion
SODIUM ION
5
SO4
2
Ligand/Ion
SULFATE ION
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
CYS A:134 , ALA A:135 , PHE A:138 , SER A:161 , VAL A:163 , HOH A:320
BINDING SITE FOR RESIDUE NA A 1
02
AC2
SOFTWARE
TYR A:77 , HIS A:90 , ARG A:111 , HOH A:268
BINDING SITE FOR RESIDUE CL A 219
03
AC3
SOFTWARE
THR A:188 , THR A:189 , ARG B:130
BINDING SITE FOR RESIDUE SO4 A 220
04
AC4
SOFTWARE
HIS A:185 , GLN A:186 , ARG B:129
BINDING SITE FOR RESIDUE SO4 A 221
05
AC5
SOFTWARE
TRP A:173 , THR A:174 , ASN A:175 , CYS A:176 , THR A:177 , GLU A:183
BINDING SITE FOR RESIDUE GOL A 222
06
AC6
SOFTWARE
VAL A:102 , ASP A:103 , ASN A:106 , ALA A:109 , PRO A:110 , ARG A:111 , ARG A:112 , HOH A:351
BINDING SITE FOR RESIDUE GOL A 223
07
AC7
SOFTWARE
PRO A:74 , TYR A:119 , CYS A:128 , HOH A:235 , HOH A:237 , HOH A:264 , HOH A:370
BINDING SITE FOR RESIDUE GOL A 224
08
AC8
SOFTWARE
GLN A:141 , PRO A:143 , GLN A:145 , HOH A:254 , HOH A:299 , HOH A:341 , TRP B:121
BINDING SITE FOR RESIDUE GOL A 225
09
AC9
SOFTWARE
GLU A:76 , CYS A:87
BINDING SITE FOR RESIDUE ACT A 226
10
BC1
SOFTWARE
PHE A:159 , HOH A:258 , HOH A:259
BINDING SITE FOR RESIDUE ACT A 227
11
BC2
SOFTWARE
CYS B:134 , ALA B:135 , PHE B:138 , SER B:161 , VAL B:163 , HOH B:251
BINDING SITE FOR RESIDUE NA B 2
12
BC3
SOFTWARE
CYS B:134 , ALA B:135
BINDING SITE FOR RESIDUE CL B 219
13
BC4
SOFTWARE
HIS B:90 , LYS B:91 , HOH B:229
BINDING SITE FOR RESIDUE CL B 220
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: TNFR_NGFR_2 (A:34-69)
2: TNFR_NGFR_1 (A:35-69)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TNFR_NGFR_2
PS50050
TNFR/NGFR family cysteine-rich region domain profile.
TNR11_MOUSE
34-69
1
A:34-69
2
TNFR_NGFR_1
PS00652
TNFR/NGFR family cysteine-rich region signature.
TNR11_MOUSE
35-69
1
A:35-69
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_TNFR_c6_3me4B01 (B:36-69)
1b: PFAM_TNFR_c6_3me4B02 (B:36-69)
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Clans
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Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: TNFR_c6]
(13)
Family
:
TNFR_c6
(13)
Mus musculus (Mouse)
(3)
1a
TNFR_c6-3me4B01
B:36-69
1b
TNFR_c6-3me4B02
B:36-69
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Asymmetric Unit 1
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Asym.Unit (120 KB)
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