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3MCV
Asym. Unit
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Asym.Unit (184 KB)
Biol.Unit 1 (175 KB)
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(1)
Title
:
STRUCTURE OF PTR1 FROM TRYPANOSOMA BRUCEI IN TERNARY COMPLEX WITH 2,4-DIAMINO-5-[2-(2,5-DIMETHOXYPHENYL)ETHYL]THIENO[2,3-D]-PYRIMIDINE AND NADP+
Authors
:
L. B. Tulloch, W. N. Hunter
Date
:
29 Mar 10 (Deposition) - 02 Jun 10 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Pteridine Reductase, Antifolate, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Dawson, L. B. Tulloch, K. L. Barrack, W. N. Hunter
High-Resolution Structures Of Trypanosoma Brucei Pteridine Reductase Ligand Complexes Inform On The Placement Of New Molecular Entities In The Active Site Of A Potential Drug Target.
Acta Crystallogr. , Sect. D V. 66 1334 2010
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Hetero Components
(3, 12)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
2a: 5-[2-(2,5-DIMETHOXYPHENYL)ETHYL]TH... (MCVa)
2b: 5-[2-(2,5-DIMETHOXYPHENYL)ETHYL]TH... (MCVb)
2c: 5-[2-(2,5-DIMETHOXYPHENYL)ETHYL]TH... (MCVc)
2d: 5-[2-(2,5-DIMETHOXYPHENYL)ETHYL]TH... (MCVd)
3a: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPa)
3b: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPb)
3c: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPc)
3d: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
4
Ligand/Ion
ACETATE ION
2
MCV
4
Ligand/Ion
5-[2-(2,5-DIMETHOXYPHENYL)ETHYL]THIENO[2,3-D]PYRIMIDINE-2,4-DIAMINE
3
NAP
4
Ligand/Ion
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
[
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:14 , ILE A:15 , TYR A:34 , HIS A:35 , ASN A:36 , SER A:37 , ALA A:61 , ASP A:62 , LEU A:63 , THR A:64 , ASN A:93 , ALA A:94 , SER A:95 , THR A:126 , LEU A:159 , CYS A:160 , TYR A:174 , LYS A:178 , PRO A:204 , GLY A:205 , SER A:207 , LEU A:208 , MCV A:300 , HOH A:306 , HOH A:307 , HOH A:321 , HOH A:331 , HOH A:362 , HOH A:368 , HOH A:383 , HOH A:409 , HOH A:448 , HOH A:454
BINDING SITE FOR RESIDUE NAP A 269
02
AC2
SOFTWARE
ARG A:14 , SER A:95 , PHE A:97 , ASP A:161 , CYS A:168 , TYR A:174 , GLY A:205 , MET A:213 , TRP A:221 , NAP A:269 , HOH A:409 , HOH A:510
BINDING SITE FOR RESIDUE MCV A 300
03
AC3
SOFTWARE
ARG A:222 , ARG A:230 , GLU A:231 , HOH A:388 , HOH A:519
BINDING SITE FOR RESIDUE ACT A 270
04
AC4
SOFTWARE
ARG B:14 , ILE B:15 , TYR B:34 , HIS B:35 , ASN B:36 , SER B:37 , ALA B:61 , ASP B:62 , LEU B:63 , THR B:64 , ASN B:93 , ALA B:94 , SER B:95 , THR B:126 , LEU B:159 , CYS B:160 , TYR B:174 , LYS B:178 , PRO B:204 , GLY B:205 , SER B:207 , LEU B:208 , MCV B:300 , HOH B:303 , HOH B:307 , HOH B:315 , HOH B:337 , HOH B:339 , HOH B:348 , HOH B:374 , HOH B:381 , HOH B:493 , HOH B:512 , HOH B:513
BINDING SITE FOR RESIDUE NAP B 269
05
AC5
SOFTWARE
ARG B:14 , SER B:95 , PHE B:97 , TYR B:174 , GLY B:205 , VAL B:206 , MET B:213 , TRP B:221 , NAP B:269 , HOH B:386 , HOH B:493
BINDING SITE FOR RESIDUE MCV B 300
06
AC6
SOFTWARE
ALA B:212 , MET B:213 , GLY B:214 , GLU B:215 , HOH B:399 , HOH B:425
BINDING SITE FOR RESIDUE ACT B 270
07
AC7
SOFTWARE
TYR B:34 , VAL B:58 , VAL C:57 , VAL C:58 , HOH C:418
BINDING SITE FOR RESIDUE ACT B 271
08
AC8
SOFTWARE
ARG C:14 , ILE C:15 , TYR C:34 , HIS C:35 , ASN C:36 , SER C:37 , ALA C:61 , ASP C:62 , LEU C:63 , THR C:64 , ASN C:93 , ALA C:94 , SER C:95 , THR C:126 , LEU C:159 , CYS C:160 , TYR C:174 , LYS C:178 , PRO C:204 , GLY C:205 , SER C:207 , LEU C:208 , MCV C:300 , HOH C:314 , HOH C:315 , HOH C:341 , HOH C:357 , HOH C:364 , HOH C:373 , HOH C:393 , HOH C:394 , HOH C:395 , HOH C:435
BINDING SITE FOR RESIDUE NAP C 269
09
AC9
SOFTWARE
ARG C:14 , SER C:95 , PHE C:97 , ASP C:161 , CYS C:168 , TYR C:174 , GLY C:205 , VAL C:206 , PRO C:210 , MET C:213 , TRP C:221 , NAP C:269 , HOH C:364
BINDING SITE FOR RESIDUE MCV C 300
10
BC1
SOFTWARE
LYS D:13 , ARG D:14 , ILE D:15 , TYR D:34 , HIS D:35 , ASN D:36 , SER D:37 , ALA D:61 , ASP D:62 , LEU D:63 , THR D:64 , ASN D:93 , ALA D:94 , SER D:95 , THR D:126 , LEU D:159 , CYS D:160 , TYR D:174 , LYS D:178 , PRO D:204 , GLY D:205 , SER D:207 , LEU D:208 , MCV D:300 , HOH D:304 , HOH D:305 , HOH D:328 , HOH D:348 , HOH D:360 , HOH D:376 , HOH D:402 , HOH D:439 , HOH D:459
BINDING SITE FOR RESIDUE NAP D 269
11
BC2
SOFTWARE
ARG D:14 , SER D:95 , PHE D:97 , ASP D:161 , CYS D:168 , TYR D:174 , GLY D:205 , VAL D:206 , MET D:213 , TRP D:221 , NAP D:269 , HOH D:439 , HOH D:487
BINDING SITE FOR RESIDUE MCV D 300
12
BC3
SOFTWARE
HIS A:267 , CYS D:168 , MET D:169 , TRP D:221
BINDING SITE FOR RESIDUE ACT D 270
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3mcva_ (A:)
1b: SCOP_d3mcvb_ (B:)
1c: SCOP_d3mcvc_ (C:)
1d: SCOP_d3mcvd_ (D:)
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Organisms
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(
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
Tyrosine-dependent oxidoreductases
(503)
Protein domain
:
Dihydropteridin reductase (pteridine reductase)
(24)
Trypanosoma brucei [TaxId: 5702]
(7)
1a
d3mcva_
A:
1b
d3mcvb_
B:
1c
d3mcvc_
C:
1d
d3mcvd_
D:
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CATH Domains
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_adh_short_C2_3mcvD01 (D:10-264)
1b: PFAM_adh_short_C2_3mcvD02 (D:10-264)
1c: PFAM_adh_short_C2_3mcvD03 (D:10-264)
1d: PFAM_adh_short_C2_3mcvD04 (D:10-264)
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Clan
:
NADP_Rossmann
(1239)
Family
:
adh_short_C2
(98)
Trypanosoma brucei brucei
(6)
1a
adh_short_C2-3mcvD01
D:10-264
1b
adh_short_C2-3mcvD02
D:10-264
1c
adh_short_C2-3mcvD03
D:10-264
1d
adh_short_C2-3mcvD04
D:10-264
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Asymmetric Unit 1
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