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3MBU
Asym. Unit
Info
Asym.Unit (50 KB)
Biol.Unit 1 (12 KB)
Biol.Unit 2 (11 KB)
Biol.Unit 3 (12 KB)
Biol.Unit 4 (12 KB)
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(1)
Title
:
STRUCTURE OF A BIPYRIDINE-MODIFIED PNA DUPLEX
Authors
:
J. I. Yeh, E. Pohl, D. Truan, W. He, G. M. Sheldrick, S. Du, Achim C.
Date
:
26 Mar 10 (Deposition) - 30 Mar 11 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.05
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Bipyridine, Peptide Nucleic Acid, Pna
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. I. Yeh, E. Pohl, D. Truan, W. He, G. M. Sheldrick, S. Du, C. Achim
The Crystal Structure Of Non-Modified And Bipyridine-Modified Pna Duplexes.
Chemistry V. 16 11867 2010
[
close entry info
]
Hetero Components
(10, 46)
Info
All Hetero Components
01a: 2-AMINOETHYLGLYCINE-CARBONYLMETHYL... (APNa)
01b: 2-AMINOETHYLGLYCINE-CARBONYLMETHYL... (APNb)
01c: 2-AMINOETHYLGLYCINE-CARBONYLMETHYL... (APNc)
01d: 2-AMINOETHYLGLYCINE-CARBONYLMETHYL... (APNd)
02a: CARBONATE ION (CO3a)
02b: CARBONATE ION (CO3b)
03a: 2-AMINOETHYLGLYCINE-CARBONYLMETHYL... (CPNa)
03b: 2-AMINOETHYLGLYCINE-CARBONYLMETHYL... (CPNb)
03c: 2-AMINOETHYLGLYCINE-CARBONYLMETHYL... (CPNc)
03d: 2-AMINOETHYLGLYCINE-CARBONYLMETHYL... (CPNd)
03e: 2-AMINOETHYLGLYCINE-CARBONYLMETHYL... (CPNe)
03f: 2-AMINOETHYLGLYCINE-CARBONYLMETHYL... (CPNf)
03g: 2-AMINOETHYLGLYCINE-CARBONYLMETHYL... (CPNg)
03h: 2-AMINOETHYLGLYCINE-CARBONYLMETHYL... (CPNh)
03i: 2-AMINOETHYLGLYCINE-CARBONYLMETHYL... (CPNi)
03j: 2-AMINOETHYLGLYCINE-CARBONYLMETHYL... (CPNj)
03k: 2-AMINOETHYLGLYCINE-CARBONYLMETHYL... (CPNk)
03l: 2-AMINOETHYLGLYCINE-CARBONYLMETHYL... (CPNl)
04a: 1,2-ETHANEDIOL (EDOa)
05a: GLYCEROL (GOLa)
05b: GLYCEROL (GOLb)
06a: 2-AMINOETHYLGLYCINE-CARBONYLMETHYL... (GPNa)
06b: 2-AMINOETHYLGLYCINE-CARBONYLMETHYL... (GPNb)
06c: 2-AMINOETHYLGLYCINE-CARBONYLMETHYL... (GPNc)
06d: 2-AMINOETHYLGLYCINE-CARBONYLMETHYL... (GPNd)
06e: 2-AMINOETHYLGLYCINE-CARBONYLMETHYL... (GPNe)
06f: 2-AMINOETHYLGLYCINE-CARBONYLMETHYL... (GPNf)
06g: 2-AMINOETHYLGLYCINE-CARBONYLMETHYL... (GPNg)
06h: 2-AMINOETHYLGLYCINE-CARBONYLMETHYL... (GPNh)
06i: 2-AMINOETHYLGLYCINE-CARBONYLMETHYL... (GPNi)
06j: 2-AMINOETHYLGLYCINE-CARBONYLMETHYL... (GPNj)
06k: 2-AMINOETHYLGLYCINE-CARBONYLMETHYL... (GPNk)
06l: 2-AMINOETHYLGLYCINE-CARBONYLMETHYL... (GPNl)
07a: N-(2-AMINOETHYL)-N-(2,2'-BIPYRIDIN... (KPNa)
07b: N-(2-AMINOETHYL)-N-(2,2'-BIPYRIDIN... (KPNb)
07c: N-(2-AMINOETHYL)-N-(2,2'-BIPYRIDIN... (KPNc)
07d: N-(2-AMINOETHYL)-N-(2,2'-BIPYRIDIN... (KPNd)
08a: S-1,2-PROPANEDIOL (PGOa)
08b: S-1,2-PROPANEDIOL (PGOb)
09a: R-1,2-PROPANEDIOL (PGRa)
09b: R-1,2-PROPANEDIOL (PGRb)
09c: R-1,2-PROPANEDIOL (PGRc)
10a: 2-AMINOETHYLGLYCINE-CARBONYLMETHYL... (TPNa)
10b: 2-AMINOETHYLGLYCINE-CARBONYLMETHYL... (TPNb)
10c: 2-AMINOETHYLGLYCINE-CARBONYLMETHYL... (TPNc)
10d: 2-AMINOETHYLGLYCINE-CARBONYLMETHYL... (TPNd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
APN
4
Mod. Amino Acid
2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-ADENINE
2
CO3
2
Ligand/Ion
CARBONATE ION
3
CPN
12
Mod. Amino Acid
2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-CYTOSINE
4
EDO
1
Ligand/Ion
1,2-ETHANEDIOL
5
GOL
2
Ligand/Ion
GLYCEROL
6
GPN
12
Mod. Amino Acid
2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-GUANINE
7
KPN
4
Mod. Amino Acid
N-(2-AMINOETHYL)-N-(2,2'-BIPYRIDIN-5-YLACETYL)GLYCINE
8
PGO
2
Ligand/Ion
S-1,2-PROPANEDIOL
9
PGR
3
Ligand/Ion
R-1,2-PROPANEDIOL
10
TPN
4
Mod. Amino Acid
2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-THYMINE
[
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GPN A:1007 , CPN A:1008 , HOH A:6108
BINDING SITE FOR RESIDUE EDO A 5003
02
AC2
SOFTWARE
GPN A:1002 , CPN A:1003 , HOH A:6021
BINDING SITE FOR RESIDUE PGR A 5009
03
AC3
SOFTWARE
GPN B:2001 , GPN B:2002 , CPN C:3009
BINDING SITE FOR RESIDUE PGR B 5004
04
AC4
SOFTWARE
GPN B:2007 , CPN B:2008
BINDING SITE FOR RESIDUE PGR B 5005
05
AC5
SOFTWARE
CPN B:2009 , GPN C:3001 , GPN C:3002 , GOL C:5006 , HOH C:6038 , HOH C:6060 , HOH C:6152
BINDING SITE FOR RESIDUE CO3 C 5002
06
AC6
SOFTWARE
GPN C:3002 , CPN C:3003 , CO3 C:5002 , HOH C:6061
BINDING SITE FOR RESIDUE GOL C 5006
07
AC7
SOFTWARE
GPN C:3007 , CPN C:3008
BINDING SITE FOR RESIDUE PGO C 5007
08
AC8
SOFTWARE
GPN D:4001 , GPN D:4002 , GOL D:5010 , HOH D:6115 , HOH D:6122
BINDING SITE FOR RESIDUE CO3 D 5001
09
AC9
SOFTWARE
GPN D:4007 , CPN D:4008
BINDING SITE FOR RESIDUE PGO D 5008
10
BC1
SOFTWARE
GPN D:4002 , CPN D:4003 , CO3 D:5001
BINDING SITE FOR RESIDUE GOL D 5010
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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select chains 'A' and 'C'
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
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Asym.Unit (50 KB)
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Biol.Unit 2 (11 KB)
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Biol.Unit 3 (12 KB)
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