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Asym. Unit
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Asym.Unit (78 KB)
Biol.Unit 1 (72 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF DEOXYURIDINE 5-TRIPHOSPHATE NUCLEOTIDOHYDROLASE FROM BRUCELLA MELITENSIS, ORTHORHOMBIC CRYSTAL FORM
Authors
:
Seattle Structural Genomics Center For Infectious Disease (S
Date
:
25 Mar 10 (Deposition) - 21 Apr 10 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Als Collaborative Crystallography, Deoxyuridine 5-Triphosphate Nucleotidohydrolase, Hydrolase, Metal-Binding, Nucleotide Metabolism, Structural Genomics, Seattle Structural Genomics Center For Infectious Disease, Ssgcid
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
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Reference
:
J. Abendroth, T. Sankaran, A. Gardberg, B. Staker
Crystal Structure Of Deoxyuridine 5-Triphosphate Nucleotidohydrolase From Brucella Melitensis, Orthorhombic Crystal Form
To Be Published
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Hetero Components
(3, 15)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
View:
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Label:
No.
Name
Count
Type
Full Name
1
EDO
7
Ligand/Ion
1,2-ETHANEDIOL
2
GOL
2
Ligand/Ion
GLYCEROL
3
SO4
6
Ligand/Ion
SULFATE ION
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:54 , GLY B:110 , ASP B:111 , ASP B:112 , HOH B:158
BINDING SITE FOR RESIDUE SO4 B 201
02
AC2
SOFTWARE
ARG A:38 , ARG A:121 , HOH A:158
BINDING SITE FOR RESIDUE SO4 A 203
03
AC3
SOFTWARE
ARG B:54 , HOH B:243 , LYS C:82 , GLY C:110 , ASP C:111 , ASP C:112 , HOH C:225
BINDING SITE FOR RESIDUE SO4 C 201
04
AC4
SOFTWARE
LYS A:82 , GLY A:110 , ASP A:111 , ASP A:112 , ARG C:54
BINDING SITE FOR RESIDUE SO4 A 201
05
AC5
SOFTWARE
ARG C:38 , ARG C:121
BINDING SITE FOR RESIDUE SO4 C 203
06
AC6
SOFTWARE
ARG C:138 , ALA C:139 , LYS C:140
BINDING SITE FOR RESIDUE SO4 C 206
07
AC7
SOFTWARE
ASP A:23 , ASP A:36 , LEU A:37 , ARG A:38 , HOH A:207
BINDING SITE FOR RESIDUE EDO A 200
08
AC8
SOFTWARE
ARG A:76 , SER A:77 , GLY A:78 , ARG A:121
BINDING SITE FOR RESIDUE EDO A 202
09
AC9
SOFTWARE
ILE A:73 , CYS A:87 , ASN A:89 , LYS A:103 , VAL A:104 , LEU A:105 , PHE C:151
BINDING SITE FOR RESIDUE EDO A 205
10
BC1
SOFTWARE
ASP B:23 , ASP B:36 , LEU B:37 , ARG B:38 , HOH B:173
BINDING SITE FOR RESIDUE EDO B 200
11
BC2
SOFTWARE
ARG B:76 , SER B:77 , GLY B:78 , GLN B:124 , HOH B:326 , HOH B:329
BINDING SITE FOR RESIDUE EDO B 202
12
BC3
SOFTWARE
ILE B:73 , CYS B:87 , ASN B:89 , LYS B:103 , VAL B:104 , LEU B:105 , HOH B:246
BINDING SITE FOR RESIDUE EDO B 205
13
BC4
SOFTWARE
ILE C:73 , CYS C:87 , ASN C:89 , LYS C:103 , VAL C:104 , LEU C:105
BINDING SITE FOR RESIDUE EDO C 205
14
BC5
SOFTWARE
LEU A:16 , GLU A:17 , HIS A:18
BINDING SITE FOR RESIDUE GOL A 204
15
BC6
SOFTWARE
ARG C:76 , SER C:77 , GLY C:78 , GLN C:124 , HOH C:217 , HOH C:318 , HOH C:319
BINDING SITE FOR RESIDUE GOL C 202
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d3mbqa_ (A:)
1b: SCOP_d3mbqb_ (B:)
1c: SCOP_d3mbqc_ (C:)
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Protein Domains
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Organisms
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Class
:
All beta proteins
(24004)
Fold
:
beta-clip
(280)
Superfamily
:
dUTPase-like
(122)
Family
:
automated matches
(51)
Protein domain
:
automated matches
(51)
Brucella melitensis [TaxId: 359391]
(2)
1a
d3mbqa_
A:
1b
d3mbqb_
B:
1c
d3mbqc_
C:
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CATH Domains
(0, 0)
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all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 3)
Info
all PFAM domains
1a: PFAM_dUTPase_3mbqC01 (C:20-151)
1b: PFAM_dUTPase_3mbqC02 (C:20-151)
1c: PFAM_dUTPase_3mbqC03 (C:20-151)
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Clan
:
dUTPase
(38)
Family
:
dUTPase
(38)
Brucella abortus (strain 2308)
(1)
1a
dUTPase-3mbqC01
C:20-151
1b
dUTPase-3mbqC02
C:20-151
1c
dUTPase-3mbqC03
C:20-151
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Asymmetric Unit 1
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