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3MBG
Biol. Unit 2
Info
Asym.Unit (77 KB)
Biol.Unit 1 (47 KB)
Biol.Unit 2 (47 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN AUGMENTER OF LIVER REGENERATION (ALR)
Authors
:
M. Dong, S. Schaefer, V. N. Daithankar, C. Thorpe, B. J. Bahnson
Date
:
25 Mar 10 (Deposition) - 21 Jul 10 (Release) - 25 Aug 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.85
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (2x)
Biol. Unit 2: B,C (1x)
Keywords
:
Flavin, Flavoprotein, Sulfhydryl Oxidase, Fad, Gfer, Alr
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
V. N. Daithankar, S. A. Schaefer, M. Dong, B. J. Bahnson, C. Thorpe
Structure Of The Human Sulfhydryl Oxidase Augmenter Of Live Regeneration And Characterization Of A Human Mutation Causing An Autosomal Recessive Myopathy .
Biochemistry V. 49 6737 2010
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Hetero Components
(2, 8)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
1e: ACETATE ION (ACTe)
1f: ACETATE ION (ACTf)
1g: ACETATE ION (ACTg)
1h: ACETATE ION (ACTh)
1i: ACETATE ION (ACTi)
1j: ACETATE ION (ACTj)
1k: ACETATE ION (ACTk)
2a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
2b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
2c: FLAVIN-ADENINE DINUCLEOTIDE (FADc)
3a: SODIUM ION (NAa)
3b: SODIUM ION (NAb)
3c: SODIUM ION (NAc)
3d: SODIUM ION (NAd)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
4c: ZINC ION (ZNc)
4d: ZINC ION (ZNd)
4e: ZINC ION (ZNe)
4f: ZINC ION (ZNf)
4g: ZINC ION (ZNg)
4h: ZINC ION (ZNh)
4i: ZINC ION (ZNi)
4j: ZINC ION (ZNj)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
6
Ligand/Ion
ACETATE ION
2
FAD
2
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
3
NA
-1
Ligand/Ion
SODIUM ION
4
ZN
-1
Ligand/Ion
ZINC ION
[
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Sites
(23, 23)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC8 (SOFTWARE)
05: AC9 (SOFTWARE)
06: BC1 (SOFTWARE)
07: BC2 (SOFTWARE)
08: BC3 (SOFTWARE)
09: BC4 (SOFTWARE)
10: BC5 (SOFTWARE)
11: BC6 (SOFTWARE)
12: BC7 (SOFTWARE)
13: BC8 (SOFTWARE)
14: BC9 (SOFTWARE)
15: CC1 (SOFTWARE)
16: CC2 (SOFTWARE)
17: CC3 (SOFTWARE)
18: CC4 (SOFTWARE)
19: CC5 (SOFTWARE)
20: CC6 (SOFTWARE)
21: CC7 (SOFTWARE)
22: CC8 (SOFTWARE)
23: CC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ZN A:3 , HOH A:22 , HOH A:27 , HOH A:47 , HOH A:59 , HOH A:64 , ARG A:99 , GLU A:100 , GLY A:103 , ARG A:104 , TRP A:107 , HIS A:111 , CYS A:145 , LEU A:149 , CYS A:171 , HIS A:174 , ASN A:175 , VAL A:177 , ASN A:178 , LYS A:180 , LEU A:181 , LYS A:183 , PHE A:186 , ARG A:194 , TRP A:195 , ACT A:207 , HOH A:211 , HOH A:232 , HOH A:439 , ASP B:159 , ARG B:161 , HOH B:229
BINDING SITE FOR RESIDUE FAD A 300
02
AC2
SOFTWARE
ASP A:159 , ACT A:206 , GLU C:100 , FAD C:300 , HOH C:441
BINDING SITE FOR RESIDUE ZN A 2
03
AC3
SOFTWARE
GLU A:100 , ACT A:207 , FAD A:300 , HOH A:439 , ASP B:159
BINDING SITE FOR RESIDUE ZN A 3
04
AC8
SOFTWARE
ARG B:99 , GLU B:100 , GLY B:103 , ARG B:104 , TRP B:107 , HIS B:111 , CYS B:145 , LEU B:149 , CYS B:171 , HIS B:174 , ASN B:175 , VAL B:177 , ASN B:178 , LYS B:180 , LEU B:181 , LYS B:183 , PHE B:186 , ARG B:194 , TRP B:195 , HOH B:217 , HOH B:246 , HOH B:285 , HOH B:292 , HOH B:440 , ASP C:159 , ARG C:161 , HOH C:285 , HOH C:310 , ACT C:800
BINDING SITE FOR RESIDUE FAD B 300
05
AC9
SOFTWARE
ASP B:98
BINDING SITE FOR RESIDUE NA B 7
06
BC1
SOFTWARE
GLU B:101 , HIS B:105 , ACT B:700 , ACT C:600
BINDING SITE FOR RESIDUE ZN B 1
07
BC2
SOFTWARE
ZN B:1 , GLU B:101 , HIS B:105 , ACT B:700 , ARG C:104 , HIS C:105 , HOH C:313
BINDING SITE FOR RESIDUE ACT C 600
08
BC3
SOFTWARE
ZN B:1 , GLU B:101 , HIS B:105 , HOH B:283 , ACT C:600 , ACT C:700
BINDING SITE FOR RESIDUE ACT B 700
09
BC4
SOFTWARE
ZN A:2 , HOH A:7 , ASP A:159 , ARG A:161 , ACT A:206 , HOH B:307 , ARG C:99 , GLU C:100 , GLY C:103 , ARG C:104 , TRP C:107 , HIS C:111 , CYS C:145 , LEU C:149 , CYS C:171 , HIS C:174 , ASN C:175 , VAL C:177 , ASN C:178 , LYS C:180 , LEU C:181 , LYS C:183 , PHE C:186 , ARG C:194 , TRP C:195 , HOH C:280 , HOH C:291 , HOH C:323 , HOH C:325 , HOH C:359 , HOH C:441
BINDING SITE FOR RESIDUE FAD C 300
10
BC5
SOFTWARE
GLU B:100 , HOH B:440 , ASP C:159 , ACT C:800
BINDING SITE FOR RESIDUE ZN C 1
11
BC6
SOFTWARE
ASP C:98 , HOH C:432
BINDING SITE FOR RESIDUE NA C 8
12
BC7
SOFTWARE
ACT B:600 , GLU C:101 , HIS C:105 , ACT C:700
BINDING SITE FOR RESIDUE ZN C 2
13
BC8
SOFTWARE
ARG B:104 , HIS B:105 , HOH B:271 , ZN C:2 , GLU C:101 , HIS C:105 , ACT C:700
BINDING SITE FOR RESIDUE ACT B 600
14
BC9
SOFTWARE
ACT B:600 , ACT B:700 , ZN C:2 , GLU C:101 , HIS C:105 , HOH C:387
BINDING SITE FOR RESIDUE ACT C 700
15
CC1
SOFTWARE
ZN A:2 , ASP A:159 , ARG A:161 , THR A:162 , ALA A:165 , GLU C:100 , LYS C:183 , FAD C:300
BINDING SITE FOR RESIDUE ACT A 206
16
CC2
SOFTWARE
ZN A:3 , GLU A:100 , LYS A:183 , FAD A:300 , ASP B:159 , ARG B:161 , THR B:162 , ALA B:165
BINDING SITE FOR RESIDUE ACT A 207
17
CC3
SOFTWARE
GLU B:100 , LEU B:181 , LYS B:183 , FAD B:300 , ZN C:1 , ASP C:159 , ARG C:161 , ALA C:165
BINDING SITE FOR RESIDUE ACT C 800
18
CC4
SOFTWARE
HIS B:134 , HIS B:157 , HOH B:425 , HOH B:468 , HOH B:469
BINDING SITE FOR RESIDUE ZN B 206
19
CC5
SOFTWARE
GLU A:147 , HIS B:172 , GLU B:176 , ARG B:179
BINDING SITE FOR RESIDUE ZN B 2
20
CC6
SOFTWARE
HIS A:172 , GLU A:176 , ARG A:179 , GLU C:147
BINDING SITE FOR RESIDUE ZN A 208
21
CC7
SOFTWARE
GLU B:147 , HOH B:273 , HIS C:172 , GLU C:176 , ARG C:179
BINDING SITE FOR RESIDUE ZN C 4
22
CC8
SOFTWARE
LYS B:138 , HOH B:210 , GLU C:124 , ASP C:128
BINDING SITE FOR RESIDUE NA C 206
23
CC9
SOFTWARE
HIS C:134 , HIS C:157 , PRO C:158 , HOH C:470
BINDING SITE FOR RESIDUE ACT C 900
[
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SAPs(SNPs)/Variants
(2, 4)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_061994 (F166L, chain B/C, )
2: VAR_063435 (R194H, chain B/C, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_061994
F
166
L
ALR_HUMAN
Polymorphism
36041021
B/C
F
166
L
2
UniProt
VAR_063435
R
194
H
ALR_HUMAN
Disease (MPMCHD)
121908192
B/C
R
194
H
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: ERV_ALR (B:95-195,C:95-195)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ERV_ALR
PS51324
ERV/ALR sulfhydryl oxidase domain profile.
ALR_HUMAN
95-195
2
-
B:95-195
C:95-195
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d3mbga_ (A:)
1b: SCOP_d3mbgb_ (B:)
1c: SCOP_d3mbgc_ (C:)
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Protein Domains
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(
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Organisms
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(
)
Class
:
All alpha proteins
(14657)
Fold
:
Four-helical up-and-down bundle
(308)
Superfamily
:
FAD-dependent thiol oxidase
(15)
Family
:
FAD-dependent thiol oxidase
(10)
Protein domain
:
Augmenter of liver regeneration
(7)
Human (Homo sapiens) [TaxId: 9606]
(6)
1a
d3mbga_
A:
1b
d3mbgb_
B:
1c
d3mbgc_
C:
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
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Pfam Domains
(1, 3)
Info
all PFAM domains
1a: PFAM_Evr1_Alr_3mbgC01 (C:104-197)
1b: PFAM_Evr1_Alr_3mbgC02 (C:104-197)
1c: PFAM_Evr1_Alr_3mbgC03 (C:104-197)
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)
Clan
:
no clan defined [family: Evr1_Alr]
(7)
Family
:
Evr1_Alr
(7)
Homo sapiens (Human)
(4)
1a
Evr1_Alr-3mbgC01
C:104-197
1b
Evr1_Alr-3mbgC02
C:104-197
1c
Evr1_Alr-3mbgC03
C:104-197
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