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3M9U
Biol. Unit 4
Info
Asym.Unit (200 KB)
Biol.Unit 1 (195 KB)
Biol.Unit 2 (99 KB)
Biol.Unit 3 (98 KB)
Biol.Unit 4 (100 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF GERANYLGERANYL PYROPHOSPHATE SYNTHASE FROM LACTOBACILLUS BREVIS ATCC 367
Authors
:
Y. Patskovsky, R. Toro, M. Rutter, J. M. Sauder, S. K. Burley, S. C. Almo, New York Structural Genomix Research Consortium (Nysgxrc), New York Sgx Research Center For Structural Genomics (Nysgxrc)
Date
:
22 Mar 10 (Deposition) - 07 Apr 10 (Release) - 07 Apr 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.77
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: A,B (1x)
Biol. Unit 3: B,C (1x)
Biol. Unit 4: C,D (1x)
Keywords
:
Isoprenyl Diphosphate Synthase, Structural Genomics, Psi, Protein Structure Initiative, New York Structural Genomix Research Consortium, Nysgxrc, Isoprene Biosynthesis, Transferase, New York Sgx Research Center For Structural Genomics
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
Y. Patskovsky, R. Toro, M. Rutter, J. M. Sauder, S. K. Burley, S. C. Almo
Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase From Lactobacillus Brevis Atcc 367
To Be Published
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Hetero Components
(1, 8)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
1g: GLYCEROL (GOLg)
1h: GLYCEROL (GOLh)
1i: GLYCEROL (GOLi)
1j: GLYCEROL (GOLj)
1k: GLYCEROL (GOLk)
1l: GLYCEROL (GOLl)
1m: GLYCEROL (GOLm)
1n: GLYCEROL (GOLn)
1o: GLYCEROL (GOLo)
1p: GLYCEROL (GOLp)
1q: GLYCEROL (GOLq)
1r: GLYCEROL (GOLr)
1s: GLYCEROL (GOLs)
1t: GLYCEROL (GOLt)
1u: GLYCEROL (GOLu)
1v: GLYCEROL (GOLv)
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No.
Name
Count
Type
Full Name
1
GOL
8
Ligand/Ion
GLYCEROL
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Sites
(15, 15)
Info
All Sites
01: AC4 (SOFTWARE)
02: AC9 (SOFTWARE)
03: BC1 (SOFTWARE)
04: BC2 (SOFTWARE)
05: BC3 (SOFTWARE)
06: BC4 (SOFTWARE)
07: BC5 (SOFTWARE)
08: BC6 (SOFTWARE)
09: BC7 (SOFTWARE)
10: BC8 (SOFTWARE)
11: BC9 (SOFTWARE)
12: CC1 (SOFTWARE)
13: CC2 (SOFTWARE)
14: CC3 (SOFTWARE)
15: CC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC4
SOFTWARE
ASP A:266 , SER A:270 , HOH A:343 , HOH A:402 , SER D:61 , SER D:281 , GLN D:283 , ARG D:284
BINDING SITE FOR RESIDUE GOL A 312
02
AC9
SOFTWARE
PRO C:21 , PRO C:68 , ARG C:73 , GLN C:175 , HOH C:353 , HOH C:372 , HOH C:526
BINDING SITE FOR RESIDUE GOL C 309
03
BC1
SOFTWARE
ASN C:19 , ALA C:20 , LEU C:22 , LYS C:23 , HOH C:338
BINDING SITE FOR RESIDUE GOL C 310
04
BC2
SOFTWARE
SER C:42 , ALA C:45 , ILE C:87 , ASP C:90 , THR C:105 , ASN C:106 , HOH C:349 , HOH C:542
BINDING SITE FOR RESIDUE GOL C 311
05
BC3
SOFTWARE
LEU C:86 , ASP C:89 , GLN C:160 , LYS C:183 , HOH C:457
BINDING SITE FOR RESIDUE GOL C 312
06
BC4
SOFTWARE
GLN C:13 , TRP C:14 , PRO C:68 , PRO C:172 , HOH C:569 , HOH C:847 , HOH C:848
BINDING SITE FOR RESIDUE GOL C 313
07
BC5
SOFTWARE
ARG C:6 , PHE C:10 , ALA C:57 , ASP C:286 , ALA C:289
BINDING SITE FOR RESIDUE GOL C 314
08
BC6
SOFTWARE
HIS D:82 , LEU D:86 , ASP D:89 , GLN D:160 , LYS D:183 , THR D:184 , HOH D:764
BINDING SITE FOR RESIDUE GOL D 309
09
BC7
SOFTWARE
ARG D:70 , HIS D:71 , LEU D:198 , HOH D:678 , HOH D:840
BINDING SITE FOR RESIDUE GOL D 310
10
BC8
SOFTWARE
GLY D:47 , LYS D:48 , HIS D:82 , LEU D:86 , ARG D:101 , HOH D:341 , HOH D:390
BINDING SITE FOR RESIDUE GOL D 311
11
BC9
SOFTWARE
ASP D:163 , LEU D:179 , ASN D:249 , HOH D:322 , HOH D:342 , HOH D:676
BINDING SITE FOR RESIDUE GOL D 312
12
CC1
SOFTWARE
SER A:61 , LEU A:62 , GLY A:63 , SER A:281 , GLN A:283 , ARG A:284 , ASP D:266 , HOH D:402 , HOH D:415
BINDING SITE FOR RESIDUE GOL D 313
13
CC2
SOFTWARE
SER D:42 , ASP D:90 , ARG D:100 , THR D:105 , ASN D:106 , HOH D:440
BINDING SITE FOR RESIDUE GOL D 314
14
CC3
SOFTWARE
LEU D:275 , LEU D:278 , PRO D:279 , THR D:280 , SER D:281 , ARG D:284 , ASP D:285 , HOH D:651
BINDING SITE FOR RESIDUE GOL D 315
15
CC4
SOFTWARE
PRO D:21 , GLN D:24 , ARG D:73
BINDING SITE FOR RESIDUE GOL D 316
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
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CATH Domains
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all CATH domains
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_polyprenyl_synt_3m9uD01 (D:35-287)
1b: PFAM_polyprenyl_synt_3m9uD02 (D:35-287)
1c: PFAM_polyprenyl_synt_3m9uD03 (D:35-287)
1d: PFAM_polyprenyl_synt_3m9uD04 (D:35-287)
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Clan
:
no clan defined [family: polyprenyl_synt]
(86)
Family
:
polyprenyl_synt
(86)
Lactobacillus brevis (strain ATCC 367 / JCM 1170)
(4)
1a
polyprenyl_synt-3m9uD01
D:35-287
1b
polyprenyl_synt-3m9uD02
D:35-287
1c
polyprenyl_synt-3m9uD03
D:35-287
1d
polyprenyl_synt-3m9uD04
D:35-287
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Asym.Unit (200 KB)
Header - Asym.Unit
Biol.Unit 1 (195 KB)
Header - Biol.Unit 1
Biol.Unit 2 (99 KB)
Header - Biol.Unit 2
Biol.Unit 3 (98 KB)
Header - Biol.Unit 3
Biol.Unit 4 (100 KB)
Header - Biol.Unit 4
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