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3M9U
Asym. Unit
Info
Asym.Unit (200 KB)
Biol.Unit 1 (195 KB)
Biol.Unit 2 (99 KB)
Biol.Unit 3 (98 KB)
Biol.Unit 4 (100 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF GERANYLGERANYL PYROPHOSPHATE SYNTHASE FROM LACTOBACILLUS BREVIS ATCC 367
Authors
:
Y. Patskovsky, R. Toro, M. Rutter, J. M. Sauder, S. K. Burley, S. C. Almo, New York Structural Genomix Research Consortium (Nysgxrc), New York Sgx Research Center For Structural Genomics (Nysgxrc)
Date
:
22 Mar 10 (Deposition) - 07 Apr 10 (Release) - 07 Apr 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.77
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: A,B (1x)
Biol. Unit 3: B,C (1x)
Biol. Unit 4: C,D (1x)
Keywords
:
Isoprenyl Diphosphate Synthase, Structural Genomics, Psi, Protein Structure Initiative, New York Structural Genomix Research Consortium, Nysgxrc, Isoprene Biosynthesis, Transferase, New York Sgx Research Center For Structural Genomics
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Patskovsky, R. Toro, M. Rutter, J. M. Sauder, S. K. Burley, S. C. Almo
Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase From Lactobacillus Brevis Atcc 367
To Be Published
[
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Hetero Components
(1, 22)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
1g: GLYCEROL (GOLg)
1h: GLYCEROL (GOLh)
1i: GLYCEROL (GOLi)
1j: GLYCEROL (GOLj)
1k: GLYCEROL (GOLk)
1l: GLYCEROL (GOLl)
1m: GLYCEROL (GOLm)
1n: GLYCEROL (GOLn)
1o: GLYCEROL (GOLo)
1p: GLYCEROL (GOLp)
1q: GLYCEROL (GOLq)
1r: GLYCEROL (GOLr)
1s: GLYCEROL (GOLs)
1t: GLYCEROL (GOLt)
1u: GLYCEROL (GOLu)
1v: GLYCEROL (GOLv)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
22
Ligand/Ion
GLYCEROL
[
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Sites
(22, 22)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LEU A:275 , LEU A:278 , PRO A:279 , THR A:280 , SER A:281 , ARG A:284 , ASP A:285
BINDING SITE FOR RESIDUE GOL A 309
02
AC2
SOFTWARE
SER A:42 , ALA A:45 , ASP A:90 , THR A:105 , ASN A:106
BINDING SITE FOR RESIDUE GOL A 310
03
AC3
SOFTWARE
ARG A:70 , HIS A:71 , MET A:139 , LEU A:198 , HOH A:757
BINDING SITE FOR RESIDUE GOL A 311
04
AC4
SOFTWARE
ASP A:266 , SER A:270 , HOH A:343 , HOH A:402 , SER D:61 , SER D:281 , GLN D:283 , ARG D:284
BINDING SITE FOR RESIDUE GOL A 312
05
AC5
SOFTWARE
THR A:131 , ALA A:132 , THR A:133 , ASP A:134 , GLN A:140 , ASN A:170 , PRO A:172 , HOH A:409 , HOH A:474
BINDING SITE FOR RESIDUE GOL A 313
06
AC6
SOFTWARE
VAL A:67 , LEU A:255 , GLY A:256 , LEU A:257 , ILE A:258 , GLY A:259 , HOH A:454 , HOH A:515 , HOH A:843
BINDING SITE FOR RESIDUE GOL A 314
07
AC7
SOFTWARE
ARG B:6 , PHE B:10 , ALA B:57 , ASP B:286 , HOH B:362 , HOH B:529
BINDING SITE FOR RESIDUE GOL B 309
08
AC8
SOFTWARE
SER B:42 , ASP B:90 , ARG B:100 , THR B:105 , ASN B:106 , HOH B:429
BINDING SITE FOR RESIDUE GOL B 310
09
AC9
SOFTWARE
PRO C:21 , PRO C:68 , ARG C:73 , GLN C:175 , HOH C:353 , HOH C:372 , HOH C:526
BINDING SITE FOR RESIDUE GOL C 309
10
BC1
SOFTWARE
ASN C:19 , ALA C:20 , LEU C:22 , LYS C:23 , HOH C:338
BINDING SITE FOR RESIDUE GOL C 310
11
BC2
SOFTWARE
SER C:42 , ALA C:45 , ILE C:87 , ASP C:90 , THR C:105 , ASN C:106 , HOH C:349 , HOH C:542
BINDING SITE FOR RESIDUE GOL C 311
12
BC3
SOFTWARE
LEU C:86 , ASP C:89 , GLN C:160 , LYS C:183 , HOH C:457
BINDING SITE FOR RESIDUE GOL C 312
13
BC4
SOFTWARE
GLN C:13 , TRP C:14 , PRO C:68 , PRO C:172 , HOH C:569 , HOH C:847 , HOH C:848
BINDING SITE FOR RESIDUE GOL C 313
14
BC5
SOFTWARE
ARG C:6 , PHE C:10 , ALA C:57 , ASP C:286 , ALA C:289
BINDING SITE FOR RESIDUE GOL C 314
15
BC6
SOFTWARE
HIS D:82 , LEU D:86 , ASP D:89 , GLN D:160 , LYS D:183 , THR D:184 , HOH D:764
BINDING SITE FOR RESIDUE GOL D 309
16
BC7
SOFTWARE
ARG D:70 , HIS D:71 , LEU D:198 , HOH D:678 , HOH D:840
BINDING SITE FOR RESIDUE GOL D 310
17
BC8
SOFTWARE
GLY D:47 , LYS D:48 , HIS D:82 , LEU D:86 , ARG D:101 , HOH D:341 , HOH D:390
BINDING SITE FOR RESIDUE GOL D 311
18
BC9
SOFTWARE
ASP D:163 , LEU D:179 , ASN D:249 , HOH D:322 , HOH D:342 , HOH D:676
BINDING SITE FOR RESIDUE GOL D 312
19
CC1
SOFTWARE
SER A:61 , LEU A:62 , GLY A:63 , SER A:281 , GLN A:283 , ARG A:284 , ASP D:266 , HOH D:402 , HOH D:415
BINDING SITE FOR RESIDUE GOL D 313
20
CC2
SOFTWARE
SER D:42 , ASP D:90 , ARG D:100 , THR D:105 , ASN D:106 , HOH D:440
BINDING SITE FOR RESIDUE GOL D 314
21
CC3
SOFTWARE
LEU D:275 , LEU D:278 , PRO D:279 , THR D:280 , SER D:281 , ARG D:284 , ASP D:285 , HOH D:651
BINDING SITE FOR RESIDUE GOL D 315
22
CC4
SOFTWARE
PRO D:21 , GLN D:24 , ARG D:73
BINDING SITE FOR RESIDUE GOL D 316
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_polyprenyl_synt_3m9uD01 (D:35-287)
1b: PFAM_polyprenyl_synt_3m9uD02 (D:35-287)
1c: PFAM_polyprenyl_synt_3m9uD03 (D:35-287)
1d: PFAM_polyprenyl_synt_3m9uD04 (D:35-287)
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Clans
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(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: polyprenyl_synt]
(86)
Family
:
polyprenyl_synt
(86)
Lactobacillus brevis (strain ATCC 367 / JCM 1170)
(4)
1a
polyprenyl_synt-3m9uD01
D:35-287
1b
polyprenyl_synt-3m9uD02
D:35-287
1c
polyprenyl_synt-3m9uD03
D:35-287
1d
polyprenyl_synt-3m9uD04
D:35-287
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Asym.Unit (200 KB)
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Biol.Unit 1 (195 KB)
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Biol.Unit 3 (98 KB)
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