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3M7P
Biol. Unit 1
Info
Asym.Unit (59 KB)
Biol.Unit 1 (105 KB)
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(1)
Title
:
FIBRONECTIN FRAGMENT
Authors
:
M. Graille, M. Pagano, T. Rose, M. Reboud Ravaux, H. Van Tilbeurgh
Date
:
17 Mar 10 (Deposition) - 23 Jun 10 (Release) - 23 Jun 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Fibronectin, Extracellular Matrix, Modular Protein, Zinc Binding, Dimer, Conformational Change, Cell Adhesion
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Graille, M. Pagano, T. Rose, M. Reboud Ravaux, H. Van Tilbeurgh
Zinc Induces Structural Reorganization Of Gelatin Binding Domain From Human Fibronectin And Affects Collagen Binding
Structure V. 18 710 2010
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Hetero Components
(2, 10)
Info
All Hetero Components
1a: DODECAETHYLENE GLYCOL (12Pa)
1b: DODECAETHYLENE GLYCOL (12Pb)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
2b: N-ACETYL-D-GLUCOSAMINE (NAGb)
2c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
3c: ZINC ION (ZNc)
3d: ZINC ION (ZNd)
3e: ZINC ION (ZNe)
3f: ZINC ION (ZNf)
3g: ZINC ION (ZNg)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
12P
4
Ligand/Ion
DODECAETHYLENE GLYCOL
2
NAG
6
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
3
ZN
-1
Ligand/Ion
ZINC ION
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PRO A:423 , ASN A:428 , ASN A:430
BINDING SITE FOR RESIDUE NAG A 1430
02
AC2
SOFTWARE
ASN A:528 , VAL A:583
BINDING SITE FOR RESIDUE NAG A 1528
03
AC3
SOFTWARE
ILE A:519 , ASN A:542 , ASP A:556
BINDING SITE FOR RESIDUE NAG A 1542
04
AC4
SOFTWARE
GLU A:467 , ASP A:529 , HIS A:532
BINDING SITE FOR RESIDUE ZN A 953
05
AC5
SOFTWARE
HOH A:34 , HIS A:535 , HIS A:598
BINDING SITE FOR RESIDUE ZN A 954
06
AC6
SOFTWARE
HOH A:13 , HIS A:383 , ASP A:522 , HIS A:539
BINDING SITE FOR RESIDUE ZN A 956
07
AC7
SOFTWARE
HIS A:404 , ASP A:433 , HIS A:466 , GLU A:468
BINDING SITE FOR RESIDUE ZN A 957
08
AC8
SOFTWARE
HOH A:10 , HIS A:299 , HIS A:307 , ASP A:574
BINDING SITE FOR RESIDUE ZN A 958
09
AC9
SOFTWARE
GLU A:474 , ASP A:485 , HIS A:488 , HIS A:581
BINDING SITE FOR RESIDUE ZN A 959
10
BC1
SOFTWARE
HOH A:36 , HOH A:37 , HOH A:38 , HOH A:39 , HOH A:40 , GLU A:537
BINDING SITE FOR RESIDUE ZN A 955
11
BC2
SOFTWARE
ARG A:379 , HIS A:383 , TRP A:385 , TYR A:392 , TYR A:398 , ILE A:509 , VAL A:520 , LEU A:541
BINDING SITE FOR RESIDUE 12P A 189
12
BC3
SOFTWARE
ASN A:338 , VAL A:340 , GLN A:586
BINDING SITE FOR RESIDUE 12P A 190
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(4, 24)
Info
All PROSITE Patterns/Profiles
1: FN1_2 (A:559-602|-|-|-)
2: FN1_1 (A:561-599|-|-|-)
3: FN2_2 (A:415-463)
4: FN2_1 (A:420-461)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FN1_2
PS51091
Fibronectin type-I domain profile.
FINC_HUMAN
50-90
95-138
139-182
184-228
229-273
306-345
468-511
516-558
559-602
2204-2248
2249-2291
2293-2333
8
-
-
-
-
-
A:306-345
A:468-511
A:516-558
A:559-602
-
-
-
2
FN1_1
PS01253
Fibronectin type-I domain signature.
FINC_HUMAN
52-87
97-135
141-179
186-225
231-270
308-342
470-508
518-555
561-599
2206-2245
2251-2288
2295-2330
8
-
-
-
-
-
A:308-342
A:470-508
A:518-555
A:561-599
-
-
-
3
FN2_2
PS51092
Fibronectin type-II collagen-binding domain profile.
FINC_HUMAN
355-403
415-463
4
A:355-403
A:415-463
4
FN2_1
PS00023
Fibronectin type-II collagen-binding domain signature.
FINC_HUMAN
360-401
420-461
4
A:360-401
A:420-461
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(2, 6)
Info
all PFAM domains
1a: PFAM_fn1_3m7pA01 (A:561-599)
1b: PFAM_fn1_3m7pA02 (A:561-599)
1c: PFAM_fn1_3m7pA03 (A:561-599)
1d: PFAM_fn1_3m7pA04 (A:561-599)
2a: PFAM_fn2_3m7pA05 (A:420-461)
2b: PFAM_fn2_3m7pA06 (A:420-461)
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Clans
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(
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(
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)
(
)
Clan
:
no clan defined [family: fn1]
(9)
Family
:
fn1
(9)
Homo sapiens (Human)
(9)
1a
fn1-3m7pA01
A:561-599
1b
fn1-3m7pA02
A:561-599
1c
fn1-3m7pA03
A:561-599
1d
fn1-3m7pA04
A:561-599
Clan
:
no clan defined [family: fn2]
(6)
Family
:
fn2
(6)
Homo sapiens (Human)
(6)
2a
fn2-3m7pA05
A:420-461
2b
fn2-3m7pA06
A:420-461
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Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Asymmetric Unit 2
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Asym.Unit (59 KB)
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